cluster # 4165

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Schistosoma mansoni
cluster # 4165 cluster # 4165 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4165#0 length = 651 sequences # 1

consensus_4165#1 length = 431 sequences # 1
consensus_4165#2 length = 244 sequences # 1

consensusID : consensus_4165#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 651
fasta sequence

                              [NCGGAGCCATTAATTCGGCACGAGGGAAATTTGATATACGCTATGTGGTATTATTACGTTCTGTCAAACCGTTAACTCTGTACACATATAAAGTATTTTGGCTTCGATTTGCAAATAAACCATTTATTTTAGACGATTTCGACTCATATGATCGACATTATACAGTTATGAATTATCGTTCCGCTGAAAATTTAAAACAAATACATTGCAATGAGTTCGTTGAATTGTTCGATAAACAATATCCAGATCACAAATGGTCAACAGTTGAGCTAAAAATACATCGACTTCTAGTTGAAATTTTTCAAGCGGCCACAAAATATCCATCACCACGTGGTCTAATTCACAATGTCCAATCTCGAGCATTATATGCTGTTGATTTATTATTAGAATGGCGTCCAAATGAATATGCTTCCTCTATTAAAAAAGATATATATCCTGTAGTATGTGAAGTGAATTTTTCACCAGATTGTGAAAGAGCATGTCTTTATCATCCGAACTTTTTCAATGATATATTTTCATGCCTATTTCTAGATCAATCATGTGATTCATGTAACATACACAAACTGACATAAATTTACTGTTATTTGTATATTGTAATCAACTAATCTTCTCAGGGTTTCATCTATACATAGTAGGAAATAAGTATTGTAT]

[+] EMBL CD081660             [NCGGAGCCATTAATTCGGCACGAGGGAAATTTGATATACGCTATGTGGTATTATTACGTTCTGTCAAACCGTTAACTCTGTACACATATAAAGTATTTTGGCTTCGATTTGCAAATAAACCATTTATTTTAGACGATTTCGACTCATATGATCGACATTATACAGTTATGAATTATCGTTCCGCTGAAAATTTAAAACAAATACATTGCAATGAGTTCGTTGAATTGTTCGATAAACAATATCCAGATCACAAATGGTCAACAGTTGAGCTAAAAATACATCGACTTCTAGTTGAAATTTTTCAAGCGGCCACAAAATATCCATCACCACGTGGTCTAATTCACAATGTCCAATCTCGAGCATTATATGCTGTTGATTTATTATTAGAATGGCGTCCAAATGAATATGCTTCCTCTATTAAAAAAGATATATATCCTGTAGTATGTGAAGTGAATTTTTCACCAGATTGTGAAAGAGCATGTCTTTATCATCCGAACTTTTTCAATGATATATTTTCATGCCTATTTCTAGATCAATCATGTGATTCATGTAACATACACAAACTGACATAAATTTACTGTTATTTGTATATTGTAATCAACTAATCTTCTCAGGGTTTCATCTATACATAGTAGGAAATAAGTATTGTAT]




>consensus_4165#0
NCGGAGCCATTAATTCGGCACGAGGGAAATTTGATATACGCTATGTGGTATTATTACGTT
CTGTCAAACCGTTAACTCTGTACACATATAAAGTATTTTGGCTTCGATTTGCAAATAAAC
CATTTATTTTAGACGATTTCGACTCATATGATCGACATTATACAGTTATGAATTATCGTT
CCGCTGAAAATTTAAAACAAATACATTGCAATGAGTTCGTTGAATTGTTCGATAAACAAT
ATCCAGATCACAAATGGTCAACAGTTGAGCTAAAAATACATCGACTTCTAGTTGAAATTT
TTCAAGCGGCCACAAAATATCCATCACCACGTGGTCTAATTCACAATGTCCAATCTCGAG
CATTATATGCTGTTGATTTATTATTAGAATGGCGTCCAAATGAATATGCTTCCTCTATTA
AAAAAGATATATATCCTGTAGTATGTGAAGTGAATTTTTCACCAGATTGTGAAAGAGCAT
GTCTTTATCATCCGAACTTTTTCAATGATATATTTTCATGCCTATTTCTAGATCAATCAT
GTGATTCATGTAACATACACAAACTGACATAAATTTACTGTTATTTGTATATTGTAATCA
ACTAATCTTCTCAGGGTTTCATCTATACATAGTAGGAAATAAGTATTGTAT

consensusID : consensus_4165#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 431
fasta sequence

                              [TTCGGGCAGGGAAAAATTTGATATACGCTATGTGGTATTATACGTTCTGTCAAACCGTTAATTCTGTACACATATAAAGTATTTGGGCTTCGATTTGCAAATAAACCATTTATTTTAGACGATTTCGACTCATATGATCGACATTATACAGTTATGAATTATCGTTCCGCTGAAAATTTAAAACAAATACATTGCAATGAAGTTCGTTGAAATTGTTCGAAAAACAATAACCGATCACAAATGGATCAACAGTTGAGCTAAAATACTCCGCTTCTAGTTGAATTTTCAGCGGCAAAAATATCCCATCCACCACGGGGTCCAATTCACATGTCCAATCTCGAGCATTATATGCTGTTGATTTATTATTAGAATGGCGTCAAATGATATGCTCCTCTATTAAAAAGATATATATCTGGTAGTATGGGAAGTGA]

[+] EMBL BE431269             [TTCGGGCAGGGAAAAATTTGATATACGCTATGTGGTATTATACGTTCTGTCAAACCGTTAATTCTGTACACATATAAAGTATTTGGGCTTCGATTTGCAAATAAACCATTTATTTTAGACGATTTCGACTCATATGATCGACATTATACAGTTATGAATTATCGTTCCGCTGAAAATTTAAAACAAATACATTGCAATGAAGTTCGTTGAAATTGTTCGAAAAACAATAACCGATCACAAATGGATCAACAGTTGAGCTAAAATACTCCGCTTCTAGTTGAATTTTCAGCGGCAAAAATATCCCATCCACCACGGGGTCCAATTCACATGTCCAATCTCGAGCATTATATGCTGTTGATTTATTATTAGAATGGCGTCAAATGATATGCTCCTCTATTAAAAAGATATATATCTGGTAGTATGGGAAGTGA]




>consensus_4165#1
TTCGGGCAGGGAAAAATTTGATATACGCTATGTGGTATTATACGTTCTGTCAAACCGTTA
ATTCTGTACACATATAAAGTATTTGGGCTTCGATTTGCAAATAAACCATTTATTTTAGAC
GATTTCGACTCATATGATCGACATTATACAGTTATGAATTATCGTTCCGCTGAAAATTTA
AAACAAATACATTGCAATGAAGTTCGTTGAAATTGTTCGAAAAACAATAACCGATCACAA
ATGGATCAACAGTTGAGCTAAAATACTCCGCTTCTAGTTGAATTTTCAGCGGCAAAAATA
TCCCATCCACCACGGGGTCCAATTCACATGTCCAATCTCGAGCATTATATGCTGTTGATT
TATTATTAGAATGGCGTCAAATGATATGCTCCTCTATTAAAAAGATATATATCTGGTAGT
ATGGGAAGTGA

consensusID : consensus_4165#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 244
fasta sequence

                              [CTGTTTTATTTTATCGTAACGATTTACAAGCTAATGTGAAATTTGATATACGCTATGTGGTATTATTACGTTCTGTCAAACCGTTAATTCTGTACACATATAAAGTATTTTGGCTTCGATTTGCAAATAAACCATTTATTTTAGACGATTTCGACTCATATGATCGACATTATACAGTTATGAATTATCGTTCCGCTGAAAATTTAAAACAAATACATTGCAATGAGTTCGTTGAATTGTTCGA]

[+] EMBL CD130003             [CTGTTTTATTTTATCGTAACGATTTACAAGCTAATGTGAAATTTGATATACGCTATGTGGTATTATTACGTTCTGTCAAACCGTTAATTCTGTACACATATAAAGTATTTTGGCTTCGATTTGCAAATAAACCATTTATTTTAGACGATTTCGACTCATATGATCGACATTATACAGTTATGAATTATCGTTCCGCTGAAAATTTAAAACAAATACATTGCAATGAGTTCGTTGAATTGTTCGA]




>consensus_4165#2
CTGTTTTATTTTATCGTAACGATTTACAAGCTAATGTGAAATTTGATATACGCTATGTGG
TATTATTACGTTCTGTCAAACCGTTAATTCTGTACACATATAAAGTATTTTGGCTTCGAT
TTGCAAATAAACCATTTATTTTAGACGATTTCGACTCATATGATCGACATTATACAGTTA
TGAATTATCGTTCCGCTGAAAATTTAAAACAAATACATTGCAATGAGTTCGTTGAATTGT
TCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4165#0      ------------NCGGAGCCATTAATTCGGCACGAGGGAAATTTGATATACGCTATGTGG 48
consensus_4165#1      -------------------------TTCGGGCAGGGAAAAATTTGATATACGCTATGTGG 35
consensus_4165#2      CTGTTTTATTTTATCGTAACGATTTACAAGCTAATGTGAAATTTGATATACGCTATGTGG 60
                                                   *     *  **********************

consensus_4165#0      TATTATTACGTTCTGTCAAACCGTTAACTCTGTACACATATAAAGTATTTTGGCTTCGAT 108
consensus_4165#1      TATTAT-ACGTTCTGTCAAACCGTTAATTCTGTACACATATAAAGTATTTGGGCTTCGAT 94
consensus_4165#2      TATTATTACGTTCTGTCAAACCGTTAATTCTGTACACATATAAAGTATTTTGGCTTCGAT 120
                      ****** ******************** ********************** *********

consensus_4165#0      TTGCAAATAAACCATTTATTTTAGACGATTTCGACTCATATGATCGACATTATACAGTTA 168
consensus_4165#1      TTGCAAATAAACCATTTATTTTAGACGATTTCGACTCATATGATCGACATTATACAGTTA 154
consensus_4165#2      TTGCAAATAAACCATTTATTTTAGACGATTTCGACTCATATGATCGACATTATACAGTTA 180
                      ************************************************************

consensus_4165#0      TGAATTATCGTTCCGCTGAAAATTTAAAACAAATACATTGCAATGA-GTTCGTTGAA-TT 226
consensus_4165#1      TGAATTATCGTTCCGCTGAAAATTTAAAACAAATACATTGCAATGAAGTTCGTTGAAATT 214
consensus_4165#2      TGAATTATCGTTCCGCTGAAAATTTAAAACAAATACATTGCAATGA-GTTCGTTGAA-TT 238
                      ********************************************** ********** **

consensus_4165#0      GTTCGATAAACAATATCCAGATCACAAATGG-TCAACAGTTGAGCTAAAAATACATCGAC 285
consensus_4165#1      GTTCGAAAAACAATAACC-GATCACAAATGGATCAACAGTTGAGCTAAAA-TAC-TCCGC 271
consensus_4165#2      GTTCGA------------------------------------------------------ 244
                      ******                                                      

consensus_4165#0      TTCTAGTTGAAATTTTTCAAGCGGCCACAAAATATCCATCACCACGTGGTCTAATTCACA 345
consensus_4165#1      TTCTAGTTGAA---TTTTCAGCGGCAAAAATATCCCATCCACCACGGGGTCCAATTCACA 328
consensus_4165#2      ------------------------------------------------------------
                                                                                  

consensus_4165#0      ATGTCCAATCTCGAGCATTATATGCTGTTGATTTATTATTAGAATGGCGTCCAAATGAAT 405
consensus_4165#1      -TGTCCAATCTCGAGCATTATATGCTGTTGATTTATTATTAGAATGGCGTC-AAATGA-T 385
consensus_4165#2      ------------------------------------------------------------
                                                                                  

consensus_4165#0      ATGCTTCCTCTATTAAAAAAGATATATATCCTGTAGTATGTGAAGTGAATTTTTCACCAG 465
consensus_4165#1      ATGCT-CCTCTATTAAAAA-GATATATATCTGGTAGTATGGGAAGTGA------------ 431
consensus_4165#2      ------------------------------------------------------------
                                                                                  

consensus_4165#0      ATTGTGAAAGAGCATGTCTTTATCATCCGAACTTTTTCAATGATATATTTTCATGCCTAT 525
consensus_4165#1      ------------------------------------------------------------
consensus_4165#2      ------------------------------------------------------------
                                                                                  

consensus_4165#0      TTCTAGATCAATCATGTGATTCATGTAACATACACAAACTGACATAAATTTACTGTTATT 585
consensus_4165#1      ------------------------------------------------------------
consensus_4165#2      ------------------------------------------------------------
                                                                                  

consensus_4165#0      TGTATATTGTAATCAACTAATCTTCTCAGGGTTTCATCTATACATAGTAGGAAATAAGTA 645
consensus_4165#1      ------------------------------------------------------------
consensus_4165#2      ------------------------------------------------------------
                                                                                  

consensus_4165#0      TTGTAT 651
consensus_4165#1      ------
consensus_4165#2      ------