These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4169#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 643 fasta sequence [TTCTTTGGTTTAGGTAATTAGGTAGCATAAAAGTCTAGGTCATCAACTGGCACTTGAATAATAAATCCTACACAAAAGATTAAATAACTCATAAGAAAATATTTCTGAATGTTTAACTTCATGTGCTGTCCGTGCATTTGTTTGAAAATGCTATTTGTTCCAATTTGATCACTGCATTAGTTCCGTTTATATTTAGTCTTAGGATGCACTGTAAGGTCAAGCTTTGTGTAGTATTCTAAGTTCAGTGTCTAAATTTATAGTACTAAGTCAGTCATAGATTTACATCATCGTAAAGCTAGTTATCTCTGCCAAACCAACTTTACCAAGGTAGTATAAAAAGGAAAAATCTGTACCTCCTTACAACAAATGTGGAATAACAATAACTACTATTTAATACGCTAGAATGGTACACTGATTGTTAAATAACCCTCTCTTAGTCTACCCATTTATTTTTTACAATATTATTGTAGATACAACGGTCCCACAATGAATCCAATTACGAATGCCAAAAATCAGAATTTAATGAATGAAAAGGAGTTATCGCTCGGTCACACAGGGACAGTTAGCAGTTGGCACAGACAATACAAAGATTCGGCTTGGATCTATGTGGGTGGTTTACATTACGATCTTACTGAAGGTGATG] [+] EMBL CD066256 [TTCTTTGGTTTAGGTAATTAGGTAGCATAAAAGTCTAGGTCATCAACTGGCACTTGAATAATAAATCCTACACAAAAGATTAAATAACTCATAAGAAAATATTTCTGAATGTTTAACTTCATGTGCTGTCCGTGCATTTGTTTGAAAATGCTATTTGTTCCAATTTGATCACTGCATTAGTTCCGTTTATATTTAGTCTTAGGATGCACTGTAAGGTCAAGCTTTGTGTAGTATTCTAAGTTCAGTGTCTAAATTTATAGTACTAAGTCAGTCATAGATTTACATCATCGTAAAGCTAGTTATCTCTGCCAAACCAACTTTACCAAGGTAGTATAAAAAGGAAAAATCTGTACCTCCTTACAACAAATGTGGAATAACAATAACTACTATTTAATACGCTAGAATGGTACACTGATTGTTAAATAACCCTCTCTTAGTCTACCCATTTATTTTTTACAATATTATTGTAGATACAACGGTCCCACAATGAATCCAATTACGAATGCCAAAAATCAGAATTTAATGAATGAAAAGGAGTTATCGCTCGGTCACACAGGGACAGTTAGCAGTTGGCACAGACAATACAAAGATTCGGCTTGGATCTATGTGGGTGGTTTACATTACGATCTTACTGAAGGTGATG] consensusID : consensus_4169#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 498 fasta sequence [AGAGGGTTACTTTAATTCGTGGTCTCGACAATCAGATACAACGGTCCCACAATGAATCCAATTACGAATGCCAAAAATCAGAATTTAATGAATGAAAAGGAGTTATCGCTCGGTCACACAGGGACAGTTAGCAGTTGGCACAGACAATACAAAGATTCGGCTTGGATCTATGTGGGTGGTTTACATTACGATCTTACTGAAGGTGATGTTATTTGTGTTTTTTCTCAGTATGGTGAAATTGTTAATATCAATTTAGTTCGGGATAAAAAGACAGGTGTATCAAAGGGATTTGCATTCGTGTGTTATGAAGATCAAAGAAGTACTGTTCTAGCTACTGATAATTTAAATGGAATAAAACTAGGAGGCCGTATAATCCGAGTAGACCACGTTGAAAAATATCGAGTACCGAAGGACGGAATTCTGGATGTTGGACATACGGATAAAAAGCCAGAGTACGAACGACCTACTGACTCTGTTTCAGAATTTGTTAAAGAGCAC] [+] EMBL CD077455 [ GAGGGTTACTTTAATTCGTGGTCTCGACAATCAGATACAACGGTCCCACAATGAATCCAATTACGAATGCCAAAAATCAGAATTTAATGAATGAAAAGGAGTTATCGCTCGGTCACACAGGGACAGTTAGCAGTTGGCACAGACAATACAAAGATTCGGCTTGGATCTATGTGGGTGGTTTACATTACGATCTTACTGAAGGTGATGTTATTTGTGTTTTTTCTCAGTATGGTGAAATTGT ] [-] EMBL CD141775 [attaaGTTACTNTAATTCGTGGTCTCGACAATCAGATACAACGGTCCCACAATGAATCCAATTACGAATGCCAAAAATCAGAATTTAATGAATGAAAAGGAGTTATCGCTCGGTCACACAGGGACAGTTAGCAGTTGGCACAGACAGTACAAAGATTCGGCTTGGATCTATGTGGGTGGTTTACATTACGATCTTACTGAAGGTGATGTTATTTGTGTTTTTTCTCAGTATGGTGAAATTGTTAATATCAATTTAGTTCGGGATAAAAAGACAGGTGTATCAAAGGGATTTGCATTCGTGTGTTATGAAGATCAAAGAAGTACTGTTCTAGCTACTGATAATTTAAATGGAATAAAACTAGGAGGCCGTATAATCCGAGTAGACCACGTTGAAAAATATCGAGTACCGAAGGACGGAATTCTGGATGTTGGACATACGGATAAAAAGCCAGAGTACGAACGACCTACTGACTCTGTTTCAGAATTTGTTAAAGAGCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4169#0 TTCTTTGGTTTAGGTAATTAGGTAGCATAAAAGTCTAGGTCATCAACTGGCACTTGAATA 60 consensus_4169#1 ------------------------------------------------------------ consensus_4169#0 ATAAATCCTACACAAAAGATTAAATAACTCATAAGAAAATATTTCTGAATGTTTAACTTC 120 consensus_4169#1 ----------------------------------------------AGAGGGTTACTTTA 14 * * *** ** consensus_4169#0 ATGTGCTGTCCGTGCATTTGTTTGAAAATGCTATTTGTTCCAATTTGATCACTGCATTAG 180 consensus_4169#1 ATTCGTGGTCTCGACAATC------AGATACAACG-GTCCCACAATGA--ATCCAATTAC 65 ** * *** ** * * ** * * ** *** *** * **** consensus_4169#0 TTCCGTTTATATTTAGTCTTAGGATGCACTGTAAGGTCAAGCTTTGTGTAGTATTCTAAG 240 consensus_4169#1 GAATGCCAAAAATCAGAATTTA-ATGAATGAAAAGG--AGTTATCGCTCGGTCACACAGG 122 * * * * ** ** *** * **** * * * ** * * consensus_4169#0 TTCAGTGTCTAAATTTATAGTACTAAGTCAGTCATAGATTTACATCATCGTAAAGCTAGT 300 consensus_4169#1 GACAGT----TAGCAGTTGGCAC-AGACAATACAAAGATTCGGCTTGGATCTATGTGGGT 177 **** * * * ** * * ** ***** * * * ** consensus_4169#0 TATCTCTGCCAAACCAACTTTACC-AAGGTAGTATAAAAAGGAAAAATCTGTACCTCCTT 359 consensus_4169#1 GGTTTACATTA---CGATCTTACTGAAGGTGATGTTA----------TTTGTGTTTTTTC 224 * * * * * **** ***** * * * * *** * * consensus_4169#0 ACAACAAATGTGGAATAACAATAACTACTATTTAATACGCTAGAATGGTACACTGATTGT 419 consensus_4169#1 TCAGTATG-GTGAAATTGT--TAATATCAATTTAGTTCGGGATAAAAAGACAG-GTGTAT 280 ** * *** *** *** * ***** * ** * ** *** * * * consensus_4169#0 TAAATAACCCTCTCTTAGTCTACCCATTTATTTTTTACAATATTATTGTAGATACAACGG 479 consensus_4169#1 CAAAGGGATTTGCATTCGTGTGTTATGAAGATCAAAGAAGTACTGTTCTAGCTACTGATA 340 *** * ** ** * * * ** * ** *** *** consensus_4169#0 TCCCACAATGAATCCAATTACGAATGCCAAAAATCAGAATTTAATGAATGAAAAGGAGTT 539 consensus_4169#1 ATTTAAATGGAATAAAACTAGGAGGCCGTATAATCCGAGTAGACCACGTTGAAAAA---T 397 * * **** ** ** ** * * **** ** * * * *** * consensus_4169#0 ATCGCTCGGTCACACAGGGACAGTTAGCAGTTGGCACAGACAATACAAAGATTCGGCTTG 599 consensus_4169#1 ATCGAGTACCGAAGGACGGAATTCTGGATGTTGG-ACATACGGATAAAAAGCCAGAGTAC 456 **** * * *** * * ***** *** ** *** * * consensus_4169#0 GATCTATGTGGGTGGTTTACATTACGATCTTACTGAAGGTGATG 643 consensus_4169#1 GAACGACCTAC-TGACTCTGTTTCAGAATTTGTTAAAGAGCAC- 498 ** * * * ** * ** ** ** * *** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||