cluster # 4232

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Schistosoma mansoni
cluster # 4232 cluster # 4232 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4232#0 length = 349 sequences # 1

consensus_4232#1 length = 304 sequences # 1
consensus_4232#2 length = 300 sequences # 1

consensusID : consensus_4232#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 349
fasta sequence

                              [ATCTATCGATTGACAAACAGTTAGTCGGCTACAGTTGAAACTACTTCATTCTGCATGGTCGACTTTATGCATGTGCGTAATGAGATCAACTACGCGGCAACTGTATCCAAACTCATTATCATACCTACATGAACTAAGTTAGGGAATAACAATATATGAAAACATACCATGAAACTAATTTCACGAAGTTGTTGTTAAGACATATCCCAGCCTTCGCATCAAAGATAGATGAACTGGTACTTCCAACAAAGTCTGAACTGACAACCTCATCTTCAGTGTATTCCAAAATCCCCTTCAATGGTNCAGATGCAGTTGCTTCAACCCAGNCTTGATTTNNTCATAGGAAGCT]

[+] EMBL CD065377             [ATCTATCGATTGACAAACAGTTAGTCGGCTACAGTTGAAACTACTTCATTCTGCATGGTCGACTTTATGCATGTGCGTAATGAGATCAACTACGCGGCAACTGTATCCAAACTCATTATCATACCTACATGAACTAAGTTAGGGAATAACAATATATGAAAACATACCATGAAACTAATTTCACGAAGTTGTTGTTAAGACATATCCCAGCCTTCGCATCAAAGATAGATGAACTGGTACTTCCAACAAAGTCTGAACTGACAACCTCATCTTCAGTGTATTCCAAAATCCCCTTCAATGGTNCAGATGCAGTTGCTTCAACCCAGNCTTGATTTNNTCATAGGAAGCT]




>consensus_4232#0
ATCTATCGATTGACAAACAGTTAGTCGGCTACAGTTGAAACTACTTCATTCTGCATGGTC
GACTTTATGCATGTGCGTAATGAGATCAACTACGCGGCAACTGTATCCAAACTCATTATC
ATACCTACATGAACTAAGTTAGGGAATAACAATATATGAAAACATACCATGAAACTAATT
TCACGAAGTTGTTGTTAAGACATATCCCAGCCTTCGCATCAAAGATAGATGAACTGGTAC
TTCCAACAAAGTCTGAACTGACAACCTCATCTTCAGTGTATTCCAAAATCCCCTTCAATG
GTNCAGATGCAGTTGCTTCAACCCAGNCTTGATTTNNTCATAGGAAGCT

consensusID : consensus_4232#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 304
fasta sequence

                              [GCATAAAGTCGACCATGCATAATGTTGTAGTTTCAACTGTAGCCGACTAACTTTTTCGTCAATCGATAGATAACGAATAAATACCGTTTAATCTGCCTAAAAAAAAAAAAAAAAAAAAAACTCGAGCCTAATTTTAGGTTATTTAGATTTAAACTACGAGGTTGAGTAGGTTTCGTAGTTTTATTATTTTTCGTTATTTGGGGTGTGGAGAGATACGAGTGTACGGATGAAGGGTTAATAGAGAATAGATTCACTTACGTCGGAGTTCTGAAGTTAATCTATTCCGTTAGACTTAGTGTGATGA]

[+] EMBL AA917145             [GCATAAAGTCGACCATGCATAATGTTGTAGTTTCAACTGTAGCCGACTAACTTTTTCGTCAATCGATAGATAACGAATAAATACCGTTTAATCTGCCTAAAAAAAAAAAAAAAAAAAAAACTCGAGCCTAATTTTAGGTTATTTAGATTTAAACTACGAGGTTGAGTAGGTTTCGTAGTTTTATTATTTTTCGTTATTTGGGGTGTGGAGAGATACGAGTGTACGGATGAAGGGTTAATAGAGAATAGATTCACTTACGTCGGAGTTCTGAAGTTAATCTATTCCGTTAGACTTAGTGTGATGA]




>consensus_4232#1
GCATAAAGTCGACCATGCATAATGTTGTAGTTTCAACTGTAGCCGACTAACTTTTTCGTC
AATCGATAGATAACGAATAAATACCGTTTAATCTGCCTAAAAAAAAAAAAAAAAAAAAAA
CTCGAGCCTAATTTTAGGTTATTTAGATTTAAACTACGAGGTTGAGTAGGTTTCGTAGTT
TTATTATTTTTCGTTATTTGGGGTGTGGAGAGATACGAGTGTACGGATGAAGGGTTAATA
GAGAATAGATTCACTTACGTCGGAGTTCTGAAGTTAATCTATTCCGTTAGACTTAGTGTG
ATGA

consensusID : consensus_4232#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 300
fasta sequence

                              [TTTGGTATTGTGATGGATGGGGGTTCCGAGAGATGGTGCAACACAGTGGCTAGAGACGTTATCAGATATGGCTCAGAATAGAAGCCAGTGGCGAGCCTATTGTAACCTTCTTTTACTTTCTTCATAAAGAGTGGTTCTAACTTTCTTAACTGGAAGAGTTTTCCGGTTGTACATTTCAGTCCCCTTATCTTTTCATCCTTTCTCTTCCTATTTTCATTATTTTGTGTAGCGCAAATGTAACTGGTGCCCTTTTGTAACAATATGTATGTGTTTAAATAAATAAATGTGTATGGGTAAGTG]

[+] EMBL BG930300             [TTTGGTATTGTGATGGATGGGGGTTCCGAGAGATGGTGCAACACAGTGGCTAGAGACGTTATCAGATATGGCTCAGAATAGAAGCCAGTGGCGAGCCTATTGTAACCTTCTTTTACTTTCTTCATAAAGAGTGGTTCTAACTTTCTTAACTGGAAGAGTTTTCCGGTTGTACATTTCAGTCCCCTTATCTTTTCATCCTTTCTCTTCCTATTTTCATTATTTTGTGTAGCGCAAATGTAACTGGTGCCCTTTTGTAACAATATGTATGTGTTTAAATAAATAAATGTGTATGGGTAAGTG]




>consensus_4232#2
TTTGGTATTGTGATGGATGGGGGTTCCGAGAGATGGTGCAACACAGTGGCTAGAGACGTT
ATCAGATATGGCTCAGAATAGAAGCCAGTGGCGAGCCTATTGTAACCTTCTTTTACTTTC
TTCATAAAGAGTGGTTCTAACTTTCTTAACTGGAAGAGTTTTCCGGTTGTACATTTCAGT
CCCCTTATCTTTTCATCCTTTCTCTTCCTATTTTCATTATTTTGTGTAGCGCAAATGTAA
CTGGTGCCCTTTTGTAACAATATGTATGTGTTTAAATAAATAAATGTGTATGGGTAAGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4232#0      ATCTATCGATTGACAAACAGTTAGTCGGCTACAGTTGAAACTACTTCATTCTGCATGGTC 60
consensus_4232#1      --------------------------GCATAAAGTCGACCATGCATAATGTTGTAGTTTC 34
consensus_4232#2      ---------------------------TTTGGTATTGTGATGGATGGGGGTTCCGAGAGA 33
                                                   *    * *              *        

consensus_4232#0      GACTTTATGCATGTGCGTAATGAGATCAACTACGCGGCAACTGTATCCAAACTCATTATC 120
consensus_4232#1      AACTGTAGCCGACTAACTTTTTCG-TCAATCGATAGATAAC-GAATAAATACCGTTTAAT 92
consensus_4232#2      TGGTGCAACACAGTGGCTAGAGACGTTATCAGATATGGCTCAGAATAGAAGCCAGT-GGC 92
                         *  *      *   *       * *            * * **  *  *   *    

consensus_4232#0      ATACCTACATGAACTAAGTTAGGGAATAACAATATATGAAAACATACCATG-AAACTAAT 179
consensus_4232#1      CTGCCTAAAAAAAAAAAAAAAAAAAAAACTCGAGCCTAATTTTAGGTTATTTAGATTTAA 152
consensus_4232#2      GAGCCTATTGTAACCTTCTTTT--ACTTTCTTCATAAAGAGTGGTTCTAACTTTCTTAAC 150
                         ****    **           *                       *       * * 

consensus_4232#0      TTCACGAAGTTGTTGTTAAGACATATCCCAGCCTTCGCATCAAAGATAGATGAACTGGTA 239
consensus_4232#1      ACTACGAGGTTG-----AGTAGGTTTCGTAGTTTTATTATTT----TTCGTTATTTGGGG 203
consensus_4232#2      TGGAAGAGTTTTCCGGTTGTACATTTC--AGTCCCCTTATCTT---TTCATCCTTT---- 201
                         * **  **         *  * **  **       **      *   *    *    

consensus_4232#0      CTTCCAACAAAGTCTGAACTGACAACCTCATCTTCAGTGTATTCCAAAATCCCCTTCAAT 299
consensus_4232#1      --TGTGGAGAGATACGAGTGTACGGATGAAGGGTTAATAGAGAATAGATTCACTTACGTC 261
consensus_4232#2      ---CTCTTCCTATTTTCATTATTTTGTGTAGCGCAAATGTAACTGGTGCCCTTTTGTAAC 258
                                  *                *     * *  *         *   *     

consensus_4232#0      GGTNCAGATGCAGTTGCTTCAACCCAGNCTTGATTTNNTCATAGGAAGCT 349
consensus_4232#1      GGAGTTC-TGAAGTTAATCTATTCC--GTTAGACTTAGTGTGATGA---- 304
consensus_4232#2      AATATGTATGTGTTTAAATAAATAA--ATGTGTATGGGTAAGTG------ 300
                              **   **     *          *  *   *