cluster # 425

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 425 cluster # 425 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_425#0 length = 579 sequences # 1

consensus_425#1 length = 313 sequences # 1

consensusID : consensus_425#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 579
fasta sequence

                              [TTGTTCTTTGTACTCAAAGTAATTTCATTCAATGCAAAAATGCAGTCTTGAAATAGAAGAGAAATTGAAGGTGTACTGAGTTTTACATGATGCACCATGTTGACCATTTTCCACCGAATGGATAAGTCACTTAACTCAGAAATCACCATCACGTCATTGAGTAATATTTACAGGTTTCTTATTTCTCTGTTCTTCTATTCATTAACTTCAAATAAATTCACTTTATTCTTTTCAAAGAAATTTGTTCGCAATACAATACAAATGAAACATGCCAAAATGCAACGACATCGACTATGACATGTTTTTGGTGTGAAAAAAAGGAGAAATGTATAATAATGTATAATAATCAGGACACTCATGACTGCCATGTTGAGGTTGGTAATTGGTAAACTTCATATGTCGTTTGCAATAACCTCAAATTTCACATTCTGAGCANATGTTTTTACTGGAAAAAATACTTTCATTGCTATCAATAACAAACGTCATGTTAGCCATCCTCAGTGACTAAATAAAAGCTTTGTATAGGTTGACGACATATGAGTACATGCTTCGTTTTTGTGAAAACAGTGAACAATGAAT]

[+] EMBL CD154650             [TTGTTCTTTGTACTCAAAGTAATTTCATTCAATGCAAAAATGCAGTCTTGAAATAGAAGAGAAATTGAAGGTGTACTGAGTTTTACATGATGCACCATGTTGACCATTTTCCACCGAATGGATAAGTCACTTAACTCAGAAATCACCATCACGTCATTGAGTAATATTTACAGGTTTCTTATTTCTCTGTTCTTCTATTCATTAACTTCAAATAAATTCACTTTATTCTTTTCAAAGAAATTTGTTCGCAATACAATACAAATGAAACATGCCAAAATGCAACGACATCGACTATGACATGTTTTTGGTGTGAAAAAAAGGAGAAATGTATAATAATGTATAATAATCAGGACACTCATGACTGCCATGTTGAGGTTGGTAATTGGTAAACTTCATATGTCGTTTGCAATAACCTCAAATTTCACATTCTGAGCANATGTTTTTACTGGAAAAAATACTTTCATTGCTATCAATAACAAACGTCATGTTAGCCATCCTCAGTGACTAAATAAAAGCTTTGTATAGGTTGACGACATATGAGTACATGCTTCGTTTTTGTGAAAACAGTGAACAATGAAT]




>consensus_425#0
TTGTTCTTTGTACTCAAAGTAATTTCATTCAATGCAAAAATGCAGTCTTGAAATAGAAGA
GAAATTGAAGGTGTACTGAGTTTTACATGATGCACCATGTTGACCATTTTCCACCGAATG
GATAAGTCACTTAACTCAGAAATCACCATCACGTCATTGAGTAATATTTACAGGTTTCTT
ATTTCTCTGTTCTTCTATTCATTAACTTCAAATAAATTCACTTTATTCTTTTCAAAGAAA
TTTGTTCGCAATACAATACAAATGAAACATGCCAAAATGCAACGACATCGACTATGACAT
GTTTTTGGTGTGAAAAAAAGGAGAAATGTATAATAATGTATAATAATCAGGACACTCATG
ACTGCCATGTTGAGGTTGGTAATTGGTAAACTTCATATGTCGTTTGCAATAACCTCAAAT
TTCACATTCTGAGCANATGTTTTTACTGGAAAAAATACTTTCATTGCTATCAATAACAAA
CGTCATGTTAGCCATCCTCAGTGACTAAATAAAAGCTTTGTATAGGTTGACGACATATGA
GTACATGCTTCGTTTTTGTGAAAACAGTGAACAATGAAT

consensusID : consensus_425#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 313
fasta sequence

                              [TTGTTCTTTGTACTCAAAGTAATTTCATTCAATCCAAAAATGCAATCTTGAAATACAAGAGAAATTGAAGGTGTACTGAGTATTGCATGATGCCCCATGTTGACCATTTTCCACCGAATGGATAGGTCACTTAATTCAGAAATCACCATCACGTCATTGAGTAATATTTACAGGATTCTTATTTTTCTGTTCTTCTATTCAATAACTTCAAATGAATTCATCTTATTCTTTTCATAGAATCTTGTTCGCAAAACTATAAAAGTGAAATATGTCAAAATGCGAAGACATCGACTACGAAATGTTTTTGTTGTGC]

[+] EMBL CD150503             [TTGTTCTTTGTACTCAAAGTAATTTCATTCAATCCAAAAATGCAATCTTGAAATACAAGAGAAATTGAAGGTGTACTGAGTATTGCATGATGCCCCATGTTGACCATTTTCCACCGAATGGATAGGTCACTTAATTCAGAAATCACCATCACGTCATTGAGTAATATTTACAGGATTCTTATTTTTCTGTTCTTCTATTCAATAACTTCAAATGAATTCATCTTATTCTTTTCATAGAATCTTGTTCGCAAAACTATAAAAGTGAAATATGTCAAAATGCGAAGACATCGACTACGAAATGTTTTTGTTGTGC]




>consensus_425#1
TTGTTCTTTGTACTCAAAGTAATTTCATTCAATCCAAAAATGCAATCTTGAAATACAAGA
GAAATTGAAGGTGTACTGAGTATTGCATGATGCCCCATGTTGACCATTTTCCACCGAATG
GATAGGTCACTTAATTCAGAAATCACCATCACGTCATTGAGTAATATTTACAGGATTCTT
ATTTTTCTGTTCTTCTATTCAATAACTTCAAATGAATTCATCTTATTCTTTTCATAGAAT
CTTGTTCGCAAAACTATAAAAGTGAAATATGTCAAAATGCGAAGACATCGACTACGAAAT
GTTTTTGTTGTGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_425#0      TTGTTCTTTGTACTCAAAGTAATTTCATTCAATGCAAAAATGCAGTCTTGAAATAGAAGA 60
consensus_425#1      TTGTTCTTTGTACTCAAAGTAATTTCATTCAATCCAAAAATGCAATCTTGAAATACAAGA 60
                     ********************************* ********** ********** ****

consensus_425#0      GAAATTGAAGGTGTACTGAGTTTTACATGATGCACCATGTTGACCATTTTCCACCGAATG 120
consensus_425#1      GAAATTGAAGGTGTACTGAGTATTGCATGATGCCCCATGTTGACCATTTTCCACCGAATG 120
                     ********************* ** ******** **************************

consensus_425#0      GATAAGTCACTTAACTCAGAAATCACCATCACGTCATTGAGTAATATTTACAGGTTTCTT 180
consensus_425#1      GATAGGTCACTTAATTCAGAAATCACCATCACGTCATTGAGTAATATTTACAGGATTCTT 180
                     **** ********* *************************************** *****

consensus_425#0      ATTTCTCTGTTCTTCTATTCATTAACTTCAAATAAATTCACTTTATTCTTTTCAAAGAAA 240
consensus_425#1      ATTTTTCTGTTCTTCTATTCAATAACTTCAAATGAATTCATCTTATTCTTTTCATAGAAT 240
                     **** **************** *********** ******  ************ **** 

consensus_425#0      TTTGTTCGCAATACAATACAAATGAAACATGCCAAAATGCAACGACATCGACTATGACAT 300
consensus_425#1      CTTGTTCGCAAAACTATAAAAGTGAAATATGTCAAAATGCGAAGACATCGACTACGAAAT 300
                      ********** ** *** ** ***** *** ******** * *********** ** **

consensus_425#0      GTTTTTGGTGTGAAAAAAAGGAGAAATGTATAATAATGTATAATAATCAGGACACTCATG 360
consensus_425#1      GTTTTTGTTGTGC----------------------------------------------- 313
                     ******* ****                                                

consensus_425#0      ACTGCCATGTTGAGGTTGGTAATTGGTAAACTTCATATGTCGTTTGCAATAACCTCAAAT 420
consensus_425#1      ------------------------------------------------------------
                                                                                 

consensus_425#0      TTCACATTCTGAGCANATGTTTTTACTGGAAAAAATACTTTCATTGCTATCAATAACAAA 480
consensus_425#1      ------------------------------------------------------------
                                                                                 

consensus_425#0      CGTCATGTTAGCCATCCTCAGTGACTAAATAAAAGCTTTGTATAGGTTGACGACATATGA 540
consensus_425#1      ------------------------------------------------------------
                                                                                 

consensus_425#0      GTACATGCTTCGTTTTTGTGAAAACAGTGAACAATGAAT 579
consensus_425#1      ---------------------------------------