These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4251#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1132 fasta sequence [CTCGAGGCCAAGATTGGGCACGAGGTCGGGTCATAAAACCGTGTGTCACGTATTGTCGTGATAGTGATGTATCACAATTTTTTATGCTAATCGCAGATTTACATTCTCTTACATCAAACAATTGTAATGACCTAAAGCATGGTATTCATGAACTTGTGGCTACTCTGCTCGCATGTGGATTTGAAGCAAATTCTTTAAAGCAAATAATATTCCTTCAATCCTCTGTACCTGGACATACTGAACTAGCATGGATTTTATCATCAGTTTGCTCGGTCTTGAGGTTAGCTCATTTACCTCAATGGAGAGAAAAATGTGGATATTTTGACTCAGTATCTGATGTATCTACCAACAATACCTCACCAATAAATAATATCCCTGATAATGCTTCTGTTGGTTTATTTACTTATCCTACTTTACAAGCTGCTGATATACTACTTTATGGAGCACATTTAGTTCCTGTTGGAGCTGATCAAATAACTCATATTGAATTAGCACGTGATCTAGTTCGATCAGCTGTACATAAATGGCCATCATTATCATCTATTTTACATTTACCTAATAGTCTTATTTTTAATGCACCTAAAATAAACAATCTAACANATCCAAATAAAAAAATGAGTAAATCAGATACATCCGAATTAGGTATTATCTATTTAACTGATACACCAGATCATATTTATAANAAAATTAAACGTGCTGAAACTGATTCTATTCGTAAAA-TAATTATGATCATGAAAAACGTCCTGGCGTATCAAATTTATTAAGAATTCTATCTGCTATTCAGGGTCGTGAGATTGAAGAAATTCTATCTACAGTAGCTAATGAATGGAGTAAAGAAGATTTGAAATCTAAAGTATCAGATGCACTTATTCAAGAATTTGATCCAATTCAGAAACGACTACATCATCTTATGAATACAGAAGAAGGTCAATCTACTATAGTTAACTGTTTATCACATGGTTCAAAGCAAGCTAATCAATTGGCCACAAAACGTTTAGATCTAATTTATTCTGCCATTGGTTGTAAGATACCAGTTTGTAAAAGTTATTCTTCATCACACAACTAGAATTGTAGCAGACCCTACTGAGTCTTCTTTCATGTACATTGGTTACAATACTTTTTATATATACAA] [+] EMBL CD081233 [CTCGAGGCCAAGATTGGGCACGAGGTCGGGTCATAAAACCGTGTGTCACGTATTGTCGTGATAGTGATGTATCACAATTTTTTATGCTAATCGCAGATTTACATTCTCTTACATCAAACAATTGTAATGACCTAAAGCATGGTATTCATGAACTTGTGGCTACTCTGCTCGCATGTGGATTTGAAGCAAATTCTTTAAAGCAAATAATATTCCTTCAATCCTCTGTACCTGGACATACTGAACTAGCATGGATTTTATCATCAGTTTGCTCGGTCTTGAGGTTAGCTCATTTACCTCAATGGAGAGAAAAATGTGGATATTTTGACTCAGTATCTGATGTATCTACCAACAATACCTCACCAATAAATAATATCCCTGATAATGCTTCTGTTGGTTTATTTACTTATCCTACTTTACAAGCTGCTGATATACTACTTTATGGAGCACATTTAGTTCCTGTTGGAGCTGATCAAATAACTCATATTGAATTAGCACGTGATCTAGTTCGATCAGCTGTACATAAATGGCCATCATTATCATCTATTTTACATTTACCTAATAGTCTTATTTTTAATGCACCTAAAATAAACAATCTAACANATCCAAATAAAAAAATGAGTAAATCAGATACATCCGAATTAGGTATTATCTATTTAACTGATACACCAGATCATATTTATAANAAAATTAAACGTGCTGAAACTGATTCTATTCGTAAAA TAATTATGATCAT ] [-] EMBL CD075064 [ AGTAAATCAGATACATCCGAATTAGGTATTATCTATTTAACTGATACACCAGATCATATTTATAAAAAAATTAAACGTGCTGAAACTGATTCTATTCGTAAAATTAATTATGATCATGAAAAACGTCCTGGCGTATCAAATTTATTAAGAATTCTATCTGCTATTCAGGGTCGTGAGATTGAAGAAATTCTATCTACAGTAGCTAATGAATGGAGTAAAGAAGATTTGAAATCTAAAGTATCAGATGCACTTATTCAAGAATTTGATCCAATTCAGAAACGACTACATCATCTTATGAATACAGAAGAAGGTCAATCTACTATAGTTAACTGTTTATCACATGGTTCAAAGCAAGCTAATCAATTGGCCACAAAACGTTTAGATCTAATTTATTCTGCCATTGGTTGTAAGATACCAGTTTGTAAAAGTTATTCTTCATCACACAACTAGAATTGTAGCAGACCCTACTGAGTCTTCTTTCATGTACATTGGTTACAATACTTTTTATATATACAA] consensusID : consensus_4251#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 479 fasta sequence [CCGAGGCAAGAATCGGCACGAGGCGTGATAGTGATGTATCACAATTTTTTATGCTAATCGCAGATTTACATTCTCTTACATCAAACAATTGTAATGACCTAAAGCATGGTATTCATGAACTTGTGGCTACTCTGCTCGCATGTGGATTTGAAGCAAATTCTTTAAAGCAAATAATATTCCTTCAATCCTCTGTACCTGGACATACTGAACTAGCATGGATTTTATCATCAGTTTGCTCGGTCTTGAGGTTAGCTCATTTACCTCAATGGAGAGAAAAATGTGGATATTTTGACTCAGTATCTGATGTATCTACCAACAATACCTCACCAATAAATAATATCCCTGATAATGCTTCTGTTGGTTTATTTACTTATCCTACTTTACAAGCTGCTGATATACTACTTTATGGAGCACATTTAGTTCCTGTTGGAGCTGATCAAATAACTCATATTGAATTAGCACGTGATCTAGTACGATCA] [+] EMBL CD077392 [CCGAGGCAAGAATCGGCACGAGGCGTGATAGTGATGTATCACAATTTTTTATGCTAATCGCAGATTTACATTCTCTTACATCAAACAATTGTAATGACCTAAAGCATGGTATTCATGAACTTGTGGCTACTCTGCTCGCATGTGGATTTGAAGCAAATTCTTTAAAGCAAATAATATTCCTTCAATCCTCTGTACCTGGACATACTGAACTAGCATGGATTTTATCATCAGTTTGCTCGGTCTTGAGGTTAGCTCATTTACCTCAATGGAGAGAAAAATGTGGATATTTTGACTCAGTATCTGATGTATCTACCAACAATACCTCACCAATAAATAATATCCCTGATAATGCTTCTGTTGGTTTATTTACTTATCCTACTTTACAAGCTGCTGATATACTACTTTATGGAGCACATTTAGTTCCTGTTGGAGCTGATCAAATAACTCATATTGAATTAGCACGTGATCTAGTACGATCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4251#0 CTCGAGGCCAAGATTGGGCACGAGGTCGGGTCATAAAACCGTGTGTCACGTATTGTCGTG 60 consensus_4251#1 -------------------------CCGAGGCAAGAATCGGCACGA--------GGCGTG 27 ** * ** ** * * * * **** consensus_4251#0 ATAGTGATGTATCACAATTTTTTATGCTAATCGCAGATTTACATTCTCTTACATCAAACA 120 consensus_4251#1 ATAGTGATGTATCACAATTTTTTATGCTAATCGCAGATTTACATTCTCTTACATCAAACA 87 ************************************************************ consensus_4251#0 ATTGTAATGACCTAAAGCATGGTATTCATGAACTTGTGGCTACTCTGCTCGCATGTGGAT 180 consensus_4251#1 ATTGTAATGACCTAAAGCATGGTATTCATGAACTTGTGGCTACTCTGCTCGCATGTGGAT 147 ************************************************************ consensus_4251#0 TTGAAGCAAATTCTTTAAAGCAAATAATATTCCTTCAATCCTCTGTACCTGGACATACTG 240 consensus_4251#1 TTGAAGCAAATTCTTTAAAGCAAATAATATTCCTTCAATCCTCTGTACCTGGACATACTG 207 ************************************************************ consensus_4251#0 AACTAGCATGGATTTTATCATCAGTTTGCTCGGTCTTGAGGTTAGCTCATTTACCTCAAT 300 consensus_4251#1 AACTAGCATGGATTTTATCATCAGTTTGCTCGGTCTTGAGGTTAGCTCATTTACCTCAAT 267 ************************************************************ consensus_4251#0 GGAGAGAAAAATGTGGATATTTTGACTCAGTATCTGATGTATCTACCAACAATACCTCAC 360 consensus_4251#1 GGAGAGAAAAATGTGGATATTTTGACTCAGTATCTGATGTATCTACCAACAATACCTCAC 327 ************************************************************ consensus_4251#0 CAATAAATAATATCCCTGATAATGCTTCTGTTGGTTTATTTACTTATCCTACTTTACAAG 420 consensus_4251#1 CAATAAATAATATCCCTGATAATGCTTCTGTTGGTTTATTTACTTATCCTACTTTACAAG 387 ************************************************************ consensus_4251#0 CTGCTGATATACTACTTTATGGAGCACATTTAGTTCCTGTTGGAGCTGATCAAATAACTC 480 consensus_4251#1 CTGCTGATATACTACTTTATGGAGCACATTTAGTTCCTGTTGGAGCTGATCAAATAACTC 447 ************************************************************ consensus_4251#0 ATATTGAATTAGCACGTGATCTAGTTCGATCAGCTGTACATAAATGGCCATCATTATCAT 540 consensus_4251#1 ATATTGAATTAGCACGTGATCTAGTACGATCA---------------------------- 479 ************************* ****** consensus_4251#0 CTATTTTACATTTACCTAATAGTCTTATTTTTAATGCACCTAAAATAAACAATCTAACAN 600 consensus_4251#1 ------------------------------------------------------------ consensus_4251#0 ATCCAAATAAAAAAATGAGTAAATCAGATACATCCGAATTAGGTATTATCTATTTAACTG 660 consensus_4251#1 ------------------------------------------------------------ consensus_4251#0 ATACACCAGATCATATTTATAANAAAATTAAACGTGCTGAAACTGATTCTATTCGTAAAA 720 consensus_4251#1 ------------------------------------------------------------ consensus_4251#0 TAATTATGATCATGAAAAACGTCCTGGCGTATCAAATTTATTAAGAATTCTATCTGCTAT 780 consensus_4251#1 ------------------------------------------------------------ consensus_4251#0 TCAGGGTCGTGAGATTGAAGAAATTCTATCTACAGTAGCTAATGAATGGAGTAAAGAAGA 840 consensus_4251#1 ------------------------------------------------------------ consensus_4251#0 TTTGAAATCTAAAGTATCAGATGCACTTATTCAAGAATTTGATCCAATTCAGAAACGACT 900 consensus_4251#1 ------------------------------------------------------------ consensus_4251#0 ACATCATCTTATGAATACAGAAGAAGGTCAATCTACTATAGTTAACTGTTTATCACATGG 960 consensus_4251#1 ------------------------------------------------------------ consensus_4251#0 TTCAAAGCAAGCTAATCAATTGGCCACAAAACGTTTAGATCTAATTTATTCTGCCATTGG 1020 consensus_4251#1 ------------------------------------------------------------ consensus_4251#0 TTGTAAGATACCAGTTTGTAAAAGTTATTCTTCATCACACAACTAGAATTGTAGCAGACC 1080 consensus_4251#1 ------------------------------------------------------------ consensus_4251#0 CTACTGAGTCTTCTTTCATGTACATTGGTTACAATACTTTTTATATATACAA 1132 consensus_4251#1 ---------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||