These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4265#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 292 fasta sequence [TGTGCAATACTTCAATGAGATGAAAATATTTATTTTTAACTTGATCGGAATGTAATCATTTATTGTGTTTTGTAAATCCGCAAGAATATGTTTGTATATGAATAAGAAAATGTTTTTTTTTAATACTACTATGGCACATACTCAAGTTTATGATAACATTGGCTTCATGTGCTGAAATTTCTATTGAAATGTTTGAAATAAAAATAATGTTTCGAAGTTTTGCTCGACTTAAAAAAAAAAAAAAANNNAGATGCATCATCTTGACTTGTCACTNTAGCAATATCAGAAAAGA] [+] EMBL SMAA69309 [TGTGCAATACTTCAATGAGATGAAAATATTTATTTTTAACTTGATCGGAATGTAATCATTTATTGTGTTTTGTAAATCCGCAAGAATATGTTTGTATATGAATAAGAAAATGTTTTTTTTTAATACTACTATGGCACATACTCAAGTTTATGATAACATTGGCTTCATGTGCTGAAATTTCTATTGAAATGTTTGAAATAAAAATAATGTTTCGAAGTTTTGCTCGACTTAAAAAAAAAAAAAAANNNAGATGCATCATCTTGACTTGTCACTNTAGCAATATCAGAAAAGA] consensusID : consensus_4265#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 215 fasta sequence [AGTGTGCAATACTTGAATGAGATGAAAATATTTATTTTTAACTTAAACGGAATGNTAATCATTTATAAGAAGTATCCTGAAATCCNGCTAAGAATATGTTTGGATATGGAATAAGAAAATAGATATTTTTCAATACCCCATGGCACATCACAAGTTTATGATACTTGGCTTCAGTGCTGAATTCTATTGAATGTTGAACAAATAGTGGGTGGGCT] [+] EMBL SMAA69322 [AGTGTGCAATACTTGAATGAGATGAAAATATTTATTTTTAACTTAAACGGAATGNTAATCATTTATAAGAAGTATCCTGAAATCCNGCTAAGAATATGTTTGGATATGGAATAAGAAAATAGATATTTTTCAATACCCCATGGCACATCACAAGTTTATGATACTTGGCTTCAGTGCTGAATTCTATTGAATGTTGAACAAATAGTGGGTGGGCT] [+] EMBL SMAA69324 [AGTGTGCAATACTTGAATGAGATGAAAATATTTATTTTTAACTTAAACGGAATGNTAATCATTTATAAGAAGTATCCTGAAATCCNGCTAAGAATATGTTTGGATATGGAATAAGAAAATAGATATTTTTCAATACCCCATGGCACATCACAAGTTTATGATACTTGGCTTCAGTGCTGAATTCTATTGAATGTTGAACAAATAGTGGGTGGGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4265#0 --TGTGCAATACTTCAATGAGATGAAAATATTTATTTTTAACTTGATCGGAATGT-AATC 57 consensus_4265#1 AGTGTGCAATACTTGAATGAGATGAAAATATTTATTTTTAACTTAAACGGAATGNTAATC 60 ************ ***************************** * ******* **** consensus_4265#0 ATTTATT----GTGTTTTGTAAATCCGC-AAGAATATGTTTGTATATG-AATAAGAAAAT 111 consensus_4265#1 ATTTATAAGAAGTATCCTGAAATCCNGCTAAGAATATGTTTGGATATGGAATAAGAAAAT 120 ****** ** * ** ** * ** ************* ***** *********** consensus_4265#0 -GTTTTTTTTTAATACTACTATGGCACATACTCAAGTTTATGATAACATTGGCTTCATGT 170 consensus_4265#1 AGATATTTTTCAATACC-CCATGGCACAT-CACAAGTTTATGATA--CTTGGCTTCA-GT 175 * * ***** ***** * ********* * ************* ********* ** consensus_4265#0 GCTGAAATTTCTATTGAAATGTTTGAAATAAAAATAATGTTTCGAAGTTTTGCTCGACTT 230 consensus_4265#1 GCTGAA--TTCTATTGAA-TGTTGAACAAATAGTGGGTGGGCT----------------- 215 ****** ********** **** * * * * ** consensus_4265#0 AAAAAAAAAAAAAAANNNAGATGCATCATCTTGACTTGTCACTNTAGCAATATCAGAAAA 290 consensus_4265#1 ------------------------------------------------------------ consensus_4265#0 GA 292 consensus_4265#1 -- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||