cluster # 4267

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Schistosoma mansoni
cluster # 4267 cluster # 4267 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4267#0 length = 631 sequences # 2

consensus_4267#1 length = 471 sequences # 1

consensusID : consensus_4267#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 631
fasta sequence

                              [TGTTGGCTGAGTGATTTGTTCTAACGTACAGAAAAGAGACAGTGAAAAACAGTGTGAATACGAAGGAATGCAACATAGAGTATATGTGAGGTTGTGAACTTGATTTTGGATTGATGGTATTGGATCAGGAAGCGAGAGGGAGAGAGAGATTGAGTAGTTTGTGGTTCATCAGCGATTGGCAATGTGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCATGCGTCACGATGATACCGGTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTCTAACGTACAGAAAAGAGACAGTGAAAAACAGTGTGAATACGAAGGAATGCAACATAGAGTATATGTGAGATTGTGAACTTGATTTTGGATTGGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGTCGTGGTGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTGTGGATTGATGGTATTGGATCANGAAGCGAGAGGGAGAGAGAGATTGNAGTAGTTGTGGTTCATCAGCGATTGGGCATGTGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCATGCGTCACGATGATACCGGTGTGTGTNGNGTGGTGTTGCTGAG]

[+] EMBL CD191676             [TGTTGGCTGAGTGATTTGTTCTAACGTACAGAAAAGAGACAGTGAAAAACAGTGTGAATACGAAGGAATGCAACATAGAGTATATGTGAGGTTGTGAACTTGATTTTGGATTGATGGTATTGGATCAGGAAGCGAGAGGGAGAGAGAGATTGAGTAGTTTGTGGTTCATCAGCGATTGGCAATGTGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCATGCGTCACGATGATACCGGTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTCTAACGTACAGAAAAGAGACAGTGAAAAACAGTGTGAATACGAAGGAATGCAACATAGAGTATATGTGAGATTGTGAACTTGATTTTGGATTGGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGTCGTGGTGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTGTGGATTGATGGTATTGGATCANGAAGCGAGAGGGAGAGAGAGATTGNAGTAGTTGTGGTTCATCAGCGATTGGGCATGTGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCATGCGTCACGATGATACCGGTGTGTGTNGNGTGGTGTTGCTGAG]
[+] EMBL CD191753             [TGTTGGCTGAGTGATTTGTTCTAACGTACAGAAAAGAGACAGTGAAAAACAGTGTGAATACGAAGGAATGCAACATAGAGTATATGTGAGGTTGTGAACTTGATTTTGGATTGATGGTATTGGATCAGGAAGCGAGAGGGAGAGAGAGATTGAGTAGTTTGTGGTTCATCAGCGATTGGCAATGTGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCATGCGTCACGATGATACCGGTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTCTAACGTACAGAAAAGAGACAGTGAAAAACAGTGTGAATACGAAGGAATGCAACATAGAGTATATGTGAGATTGTGAACTTGATTTTGGATTGGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGTCGTGGTGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTGTGGATTGATGGTATTGGATCANGAAGCGAGAGGGAGAGAG                                                                                                                          ]




>consensus_4267#0
TGTTGGCTGAGTGATTTGTTCTAACGTACAGAAAAGAGACAGTGAAAAACAGTGTGAATA
CGAAGGAATGCAACATAGAGTATATGTGAGGTTGTGAACTTGATTTTGGATTGATGGTAT
TGGATCAGGAAGCGAGAGGGAGAGAGAGATTGAGTAGTTTGTGGTTCATCAGCGATTGGC
AATGTGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCATGCGTCACGATGATA
CCGGTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTCTAACGTACAGAAAAGAGACAG
TGAAAAACAGTGTGAATACGAAGGAATGCAACATAGAGTATATGTGAGATTGTGAACTTG
ATTTTGGATTGGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGTCGTGGTGGTCGATG
TAGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTGTGGATTGATGG
TATTGGATCANGAAGCGAGAGGGAGAGAGAGATTGNAGTAGTTGTGGTTCATCAGCGATT
GGGCATGTGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCATGCGTCACGATG
ATACCGGTGTGTGTNGNGTGGTGTTGCTGAG

consensusID : consensus_4267#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 471
fasta sequence

                              [GCGATTGGCAATGTGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCATGCGTCACGATGATACCGGTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTCTAACGTACAGAAAAGAGACAGTGAAAAACAGTGTGAATACGAAGGAATGCTACTTATGAGTAATTGCGAGGTGATAGTGTGTGGATTGATGGTCTTGGATCAGGAAGCGAGAGGGAGAGAGAGATTGAGTAGTTTGTGGTTCATCAGCGATTGGCAATGTGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCATGCGTTACGATGATACCGGTGTGTGTTGAGTGGTGTAGGCTGAGTGATTGGTTCTTATCGTCAGAAAAGAGACAGTTGACTACAGTGTGACTACGAAGGACTGCCCGGTATAGTCTATGTGACGTTGCGAACTTGATTTTGGATTGACATATCTAGATTGTCT]

[+] EMBL CD133474             [GCGATTGGCAATGTGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCATGCGTCACGATGATACCGGTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTCTAACGTACAGAAAAGAGACAGTGAAAAACAGTGTGAATACGAAGGAATGCTACTTATGAGTAATTGCGAGGTGATAGTGTGTGGATTGATGGTCTTGGATCAGGAAGCGAGAGGGAGAGAGAGATTGAGTAGTTTGTGGTTCATCAGCGATTGGCAATGTGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCATGCGTTACGATGATACCGGTGTGTGTTGAGTGGTGTAGGCTGAGTGATTGGTTCTTATCGTCAGAAAAGAGACAGTTGACTACAGTGTGACTACGAAGGACTGCCCGGTATAGTCTATGTGACGTTGCGAACTTGATTTTGGATTGACATATCTAGATTGTCT]




>consensus_4267#1
GCGATTGGCAATGTGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCATGCGTC
ACGATGATACCGGTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTCTAACGTACAGAA
AAGAGACAGTGAAAAACAGTGTGAATACGAAGGAATGCTACTTATGAGTAATTGCGAGGT
GATAGTGTGTGGATTGATGGTCTTGGATCAGGAAGCGAGAGGGAGAGAGAGATTGAGTAG
TTTGTGGTTCATCAGCGATTGGCAATGTGGACATATGATGTGGTCTAGTGAAGCGATCCT
ATCGGTCATGCGTTACGATGATACCGGTGTGTGTTGAGTGGTGTAGGCTGAGTGATTGGT
TCTTATCGTCAGAAAAGAGACAGTTGACTACAGTGTGACTACGAAGGACTGCCCGGTATA
GTCTATGTGACGTTGCGAACTTGATTTTGGATTGACATATCTAGATTGTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4267#0      ------------------------------------------------------------
consensus_4267#1      GCGATTGGCAATGTGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCATGCGTC 60
                                                                                  

consensus_4267#0      ---------------------------TGTTGGCTGAGTGATTTGTTCTAACGTACAGAA 33
consensus_4267#1      ACGATGATACCGGTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTCTAACGTACAGAA 120
                                                 *********************************

consensus_4267#0      AAGAGACAGTGAAAAACAGTGTGAATACGAAGGAATGCAACATA-GAGTATATGTGAGGT 92
consensus_4267#1      AAGAGACAGTGAAAAACAGTGTGAATACGAAGGAATGCTACTTATGAGTAATTGCGAGGT 180
                      ************************************** ** ** *****  ** *****

consensus_4267#0      TGTGAACTTGATTTTGGATTGATGGTATTGGATCAGGAAGCGAGAGGGAGAGAGAGATTG 152
consensus_4267#1      GATA-----GTGTGTGGATTGATGGTCTTGGATCAGGAAGCGAGAGGGAGAGAGAGATTG 235
                        *      *  * ************ *********************************

consensus_4267#0      AGTAGTTTGTGGTTCATCAGCGATTGGCAATGTGGACATATGATGTGGTCTAGTGAAGCG 212
consensus_4267#1      AGTAGTTTGTGGTTCATCAGCGATTGGCAATGTGGACATATGATGTGGTCTAGTGAAGCG 295
                      ************************************************************

consensus_4267#0      ATCCTATCGGTCATGCGTCACGATGATACCGGTGTGTGTTGTGTGGTGTTGGCTGAGTGA 272
consensus_4267#1      ATCCTATCGGTCATGCGTTACGATGATACCGGTGTGTGTTGAGTGGTGTAGGCTGAGTGA 355
                      ****************** ********************** ******* **********

consensus_4267#0      TTTGTTCTAACGTACAGAAAAGAGACAGTGAAAAACAGTGTGAATACGAAGGAATGCAAC 332
consensus_4267#1      TTGGTTCTTATCGTCAGAAAAGAGACAGTTGACTACAGTGTGACTACGAAGGACTGCCCG 415
                      ** ***** *    ***************  *  ********* ********* ***   

consensus_4267#0      ATAGAGTATATGTGAGATTGTGAACTTGATTTTGGATTGGCATATCGAGATTGTCTGTTG 392
consensus_4267#1      GTATAGTCTATGTGACGTTGCGAACTTGATTTTGGATTGACATATCTAGATTGTCT---- 471
                       ** *** *******  *** ****************** ****** *********    

consensus_4267#0      ATTGTGCCAGGTGTCGTGGTGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAAT 452
consensus_4267#1      ------------------------------------------------------------
                                                                                  

consensus_4267#0      TGTGAGGTGATAGTGTGTGGATTGATGGTATTGGATCANGAAGCGAGAGGGAGAGAGAGA 512
consensus_4267#1      ------------------------------------------------------------
                                                                                  

consensus_4267#0      TTGNAGTAGTTGTGGTTCATCAGCGATTGGGCATGTGGACATATGATGTGGTCTAGTGAA 572
consensus_4267#1      ------------------------------------------------------------
                                                                                  

consensus_4267#0      GCGATCCTATCGGTCATGCGTCACGATGATACCGGTGTGTGTNGNGTGGTGTTGCTGAG 631
consensus_4267#1      -----------------------------------------------------------