cluster # 4293

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 4293 cluster # 4293 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4293#0 length = 751 sequences # 2

consensus_4293#1 length = 232 sequences # 1

consensusID : consensus_4293#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 751
fasta sequence

                              [TCGAGGACCTAATATTTCAAAAATGTCATCTGATGGTGGTTTTGATGGTTACTTTCTGCTGTCAGTAACTGGACAGATTGAAAAGGCTGACTTCCCACTCCATGACTATATATGGTGCAAGTACTGCTTCGCAACTGGTCAAGACTGGACCAAATTAACCGGCCTCGATGAAGGAATGACTCAAACCTCTATTAAAGGTGTCGGTTGCAACGATCAGAACAATTTTAACTTTCCGATTGATATTTCATGGAAATCCACAAACCCATTCGGTTGGCCTCAAATCGTTCTTCATGCTTATGGCGTTGACGTCTTTGGCAAGGATGTTTTACGAGGTTATGGTGCCGTTCACGTCCCAATGAAGATCGGAAGCCACAGAAAAAGAGTTTCCATGTTTGTGCCTCAATCTTCTTCACAACTAATGAAATTGAATGCATGGTTAACTGGAAAAAGACCAGAGTTTCTTAATCCAAAAGTAATAGCTTGTGGTGAGGGTCGTGGAGTAACTAAAGTGCAAACCCAAGGCTTCGTAGATATCATATTCAATATCGCTGTAAAAAATCTACAGAATTTAGGTTATGCTAATGACAAGAAAAGGGAGACTNTAACAGAAGATTTATTGATGCTAATAAATAAAGATCCGATATAGAAATTATGGAAATGGTNTATTATTATTGGTATTATTAATACATAAGTTNCTCCCTTTTGNTAAGTGAACCCTGAT-AGATACTTGATAAATAAT-AATNATTTAGGT]

[+] EMBL CD082229             [TCGAGGACCTAATATTTCAAAAATGTCATCTGATGGTGGTTTTGATGGTTACTTTCTGCTGTCAGTAACTGGACAGATTGAAAAGGCTGACTTCCCACTCCATGACTATATATGGTGCAAGTACTGCTTCGCAACTGGTCAAGACTGGACCAAATTAACCGGCCTCGATGAAGGAATGACTCAAACCTCTATTAAAGGTGTCGGTTGCAACGATCAGAACAATTTTAACTTTCCGATTGATATTTCATGGAAATCCACAAACCCATTCGGTTGGCCTCAAATCGTTCTTCATGCTTATGGCGTTGACGTCTTTGGCAAGGATGTTTTACGAGGTTATGGTGCCGTTCACGTCCCAATGAAGATCGGAAGCCACAGAAAAAGAGTTTCCATGTTTGTGCCTCAATCTTCTTCACAACTAATGAAATTGAATGCATGGTTAACTGGAAAAAGACCAGAGTTTCTTAATCCAAAAGTAATAGCTTGTGGTGAGGGTCGTGGAGTAACTAAAGTGCAAACCCAAGGCTTCGTAGATATCATATTCAATATCGCTGTAAAAAATCTACAGAATTTAGGTTATGCTAATGACAAGAAAAGGGAGACTNTAACAGAAGATTTATTGATGCTAATAAATAAAGATCCGATATAGAAATTATGGAAATGGTNTATTATTATTGGTATTATTAATACATAAGTTNCTCCCTTTTGNTAAGTGAACCCTGAT AGATACTTGATAAATAAT AATNATTTAGGT]
[-] EMBL CD075840             [                                                                                                                                                                            GGAATGACTCAAACCTCTATTAAAGGTGTCGGTTGCAACGATCAGAACAATTTTAACTTTCCGATTGATATTTCATGGAAATCCACAAACCCATTCGGTTGGCCTCAAATCGTTCTTCATGCTTATGGCGTTGACGTCTTTGGCAAGGATGTTTTACGAGGTTATGGTGCCGTTCACGTCCCAATGAAGATCGGAAGCCACAGAAAAAGAGTTTCCATGTTTGTGCCTCAATCTTCTTCACAACTAATGAAATTGAATGCATGGTTAACTGGAAAAAGACCAGAGTTTCTTAATCCAAAAGTAATAGCTTGTGGTGAGGGTCGTGGAGTAACTAAAGTGCAAACCCAAGGCTTCGTAGATATCATATTCAATATCGCTGTAAAAAATCTACAGAATTTAGGTTATGCTAATGACAAGAAAAGGGAGACTTTAACAGAAGATTTATTGATGCTAATAAATAAAGATCCGATATAGAAATTATGGAAATGTTTTATTATTATTGTTATTATTATTACATAAGTTTCTCCCTTTTGTTAAGTGAA CCTGATAAGATACTTGATAAATAATAAATTATTTAGtt]




>consensus_4293#0
TCGAGGACCTAATATTTCAAAAATGTCATCTGATGGTGGTTTTGATGGTTACTTTCTGCT
GTCAGTAACTGGACAGATTGAAAAGGCTGACTTCCCACTCCATGACTATATATGGTGCAA
GTACTGCTTCGCAACTGGTCAAGACTGGACCAAATTAACCGGCCTCGATGAAGGAATGAC
TCAAACCTCTATTAAAGGTGTCGGTTGCAACGATCAGAACAATTTTAACTTTCCGATTGA
TATTTCATGGAAATCCACAAACCCATTCGGTTGGCCTCAAATCGTTCTTCATGCTTATGG
CGTTGACGTCTTTGGCAAGGATGTTTTACGAGGTTATGGTGCCGTTCACGTCCCAATGAA
GATCGGAAGCCACAGAAAAAGAGTTTCCATGTTTGTGCCTCAATCTTCTTCACAACTAAT
GAAATTGAATGCATGGTTAACTGGAAAAAGACCAGAGTTTCTTAATCCAAAAGTAATAGC
TTGTGGTGAGGGTCGTGGAGTAACTAAAGTGCAAACCCAAGGCTTCGTAGATATCATATT
CAATATCGCTGTAAAAAATCTACAGAATTTAGGTTATGCTAATGACAAGAAAAGGGAGAC
TNTAACAGAAGATTTATTGATGCTAATAAATAAAGATCCGATATAGAAATTATGGAAATG
GTNTATTATTATTGGTATTATTAATACATAAGTTNCTCCCTTTTGNTAAGTGAACCCTGA
TAGATACTTGATAAATAATAATNATTTAGGT

consensusID : consensus_4293#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 232
fasta sequence

                              [GGCCTCGTAGATATCATATTCAATANCGCTGNAAAAAATCTACAGGATTTAGGTTATGCTAATGACNAGAAAAGGGAGACTTTAACAGGAGATTTATTGATGCTAATAAATAAAGAACCGATATAGNAATTATGGAAATGNTTTATTATTANTGNTATTATTATTACATAAGTTTCTCCCTTTTGTTAAGTGAACCTGATAAGATACTTGATAAATAATAAATTATTTAGTT]

[-] EMBL SMT14398             [GGCCTCGTAGATATCATATTCAATANCGCTGNAAAAAATCTACAGGATTTAGGTTATGCTAATGACNAGAAAAGGGAGACTTTAACAGGAGATTTATTGATGCTAATAAATAAAGAACCGATATAGNAATTATGGAAATGNTTTATTATTANTGNTATTATTATTACATAAGTTTCTCCCTTTTGTTAAGTGAACCTGATAAGATACTTGATAAATAATAAATTATTTAGTT]




>consensus_4293#1
GGCCTCGTAGATATCATATTCAATANCGCTGNAAAAAATCTACAGGATTTAGGTTATGCT
AATGACNAGAAAAGGGAGACTTTAACAGGAGATTTATTGATGCTAATAAATAAAGAACCG
ATATAGNAATTATGGAAATGNTTTATTATTANTGNTATTATTATTACATAAGTTTCTCCC
TTTTGTTAAGTGAACCTGATAAGATACTTGATAAATAATAAATTATTTAGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4293#0      TCGAGGACCTAATATTTCAAAAATGTCATCTGATGGTGGTTTTGATGGTTACTTTCTGCT 60
consensus_4293#1      ------------------------------------------------------------
                                                                                  

consensus_4293#0      GTCAGTAACTGGACAGATTGAAAAGGCTGACTTCCCACTCCATGACTATATATGGTGCAA 120
consensus_4293#1      ------------------------------------------------------------
                                                                                  

consensus_4293#0      GTACTGCTTCGCAACTGGTCAAGACTGGACCAAATTAACCGGCCTCGATGAAGGAATGAC 180
consensus_4293#1      ------------------------------------------------------------
                                                                                  

consensus_4293#0      TCAAACCTCTATTAAAGGTGTCGGTTGCAACGATCAGAACAATTTTAACTTTCCGATTGA 240
consensus_4293#1      ------------------------------------------------------------
                                                                                  

consensus_4293#0      TATTTCATGGAAATCCACAAACCCATTCGGTTGGCCTCAAATCGTTCTTCATGCTTATGG 300
consensus_4293#1      ------------------------------------------------------------
                                                                                  

consensus_4293#0      CGTTGACGTCTTTGGCAAGGATGTTTTACGAGGTTATGGTGCCGTTCACGTCCCAATGAA 360
consensus_4293#1      ------------------------------------------------------------
                                                                                  

consensus_4293#0      GATCGGAAGCCACAGAAAAAGAGTTTCCATGTTTGTGCCTCAATCTTCTTCACAACTAAT 420
consensus_4293#1      ------------------------------------------------------------
                                                                                  

consensus_4293#0      GAAATTGAATGCATGGTTAACTGGAAAAAGACCAGAGTTTCTTAATCCAAAAGTAATAGC 480
consensus_4293#1      ------------------------------------------------------------
                                                                                  

consensus_4293#0      TTGTGGTGAGGGTCGTGGAGTAACTAAAGTGCAAACCCAAGGCTTCGTAGATATCATATT 540
consensus_4293#1      ----------------------------------------GGCCTCGTAGATATCATATT 20
                                                              *** ****************

consensus_4293#0      CAATATCGCTGTAAAAAATCTACAGAATTTAGGTTATGCTAATGACAAGAAAAGGGAGAC 600
consensus_4293#1      CAATANCGCTGNAAAAAATCTACAGGATTTAGGTTATGCTAATGACNAGAAAAGGGAGAC 80
                      ***** ***** ************* ******************** *************

consensus_4293#0      TNTAACAGAAGATTTATTGATGCTAATAAATAAAGATCCGATATAGAAATTATGGAAATG 660
consensus_4293#1      TTTAACAGGAGATTTATTGATGCTAATAAATAAAGAACCGATATAGNAATTATGGAAATG 140
                      * ****** *************************** ********* *************

consensus_4293#0      GTNTATTATTATTGGTATTATTAATACATAAGTTNCTCCCTTTTGNTAAGTGAACCCTGA 720
consensus_4293#1      NTTTATTATTANTGNTATTATTATTACATAAGTTTCTCCCTTTTGTTAAGTGAACCTGAT 200
                       * ******** ** ******** ********** ********** **********    

consensus_4293#0      TAGATACTTGATAAATAATAA-TNATTTAGGT 751
consensus_4293#1      AAGATACTTGATAAATAATAAATTATTTAGTT 232
                       ******************** * ****** *