cluster # 4312

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Schistosoma mansoni
cluster # 4312 cluster # 4312 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4312#0 length = 600 sequences # 1

consensus_4312#1 length = 405 sequences # 1
consensus_4312#2 length = 330 sequences # 1

consensusID : consensus_4312#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 600
fasta sequence

                              [TTTGCCTACTTACCAGGTGATTCAGACATAGTTTGCATTAATGCATTACATAATGAAATAACTGACGAATACTTCGTTGCTATTGGCTTTGTAAAGGAAGGAGAAAAAGGGNNNNNNNNNNNNNNNNNNNNNNNNNNTCAGAAGAAAAGTTACCGGGTATGTTTTATACAGAAATCAATCAATAAGTATTTTGTGCAGAAAATTGTTTGAGTTATTCCAAGTTACCTTGTGCTCCTCTCCATTTGACTCATGCACATTGGGCATTCTTTTTGTCTTATGGTGAACCTTTTAGCGAAACTTCCAGTCAACAAAAGCCTTCAAATCAACCACAAGTCAAAATATTCTCTAAACTTATTGATACTAATGTTTTTGAACAGGTTGAAATNNNNNNNNNNNNNNNNNNNNNNNAATTAAATTTGTCTCAAAACTGTCATTCTAGTGCGGCTTATGGTGAATTACCATTTAATATTGCTGTGGTACTTTTCCCAGAGCTAACAAAATTACCGACGACATTAATTTTCCTACATATGGATTNTAAAATTATCACAAGATGGGTGGTTTGGTTTATTCTCTGTGGATATGAAATCTCGTAGAATATAC]

[+] EMBL CD081034             [TTTGCCTACTTACCAGGTGATTCAGACATAGTTTGCATTAATGCATTACATAATGAAATAACTGACGAATACTTCGTTGCTATTGGCTTTGTAAAGGAAGGAGAAAAAGGGNNNNNNNNNNNNNNNNNNNNNNNNNNTCAGAAGAAAAGTTACCGGGTATGTTTTATACAGAAATCAATCAATAAGTATTTTGTGCAGAAAATTGTTTGAGTTATTCCAAGTTACCTTGTGCTCCTCTCCATTTGACTCATGCACATTGGGCATTCTTTTTGTCTTATGGTGAACCTTTTAGCGAAACTTCCAGTCAACAAAAGCCTTCAAATCAACCACAAGTCAAAATATTCTCTAAACTTATTGATACTAATGTTTTTGAACAGGTTGAAATNNNNNNNNNNNNNNNNNNNNNNNAATTAAATTTGTCTCAAAACTGTCATTCTAGTGCGGCTTATGGTGAATTACCATTTAATATTGCTGTGGTACTTTTCCCAGAGCTAACAAAATTACCGACGACATTAATTTTCCTACATATGGATTNTAAAATTATCACAAGATGGGTGGTTTGGTTTATTCTCTGTGGATATGAAATCTCGTAGAATATAC]




>consensus_4312#0
TTTGCCTACTTACCAGGTGATTCAGACATAGTTTGCATTAATGCATTACATAATGAAATA
ACTGACGAATACTTCGTTGCTATTGGCTTTGTAAAGGAAGGAGAAAAAGGGNNNNNNNNN
NNNNNNNNNNNNNNNNNTCAGAAGAAAAGTTACCGGGTATGTTTTATACAGAAATCAATC
AATAAGTATTTTGTGCAGAAAATTGTTTGAGTTATTCCAAGTTACCTTGTGCTCCTCTCC
ATTTGACTCATGCACATTGGGCATTCTTTTTGTCTTATGGTGAACCTTTTAGCGAAACTT
CCAGTCAACAAAAGCCTTCAAATCAACCACAAGTCAAAATATTCTCTAAACTTATTGATA
CTAATGTTTTTGAACAGGTTGAAATNNNNNNNNNNNNNNNNNNNNNNNAATTAAATTTGT
CTCAAAACTGTCATTCTAGTGCGGCTTATGGTGAATTACCATTTAATATTGCTGTGGTAC
TTTTCCCAGAGCTAACAAAATTACCGACGACATTAATTTTCCTACATATGGATTNTAAAA
TTATCACAAGATGGGTGGTTTGGTTTATTCTCTGTGGATATGAAATCTCGTAGAATATAC

consensusID : consensus_4312#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 405
fasta sequence

                              [TAGGTCTACAGACATATGTAGAATTATTCCACTTTCCATCGTTGGCTCGGTCAAATGTTTTCAACTTAACGTTTCTGAAGTCTGATGCTGCAAAAAGATCAAAAACTAATCGAAAAACGTACGACATACTGGTCGCATTTTTCCGCCCAGTAAGCGATCCACTAGCCAGCAAGTATTCCTTTAGTATACACCATTTCGATGTAGAAGACAAAATTATTCAGCCACTAACTAAAACTATTGATTTTGCCTACTTACCAGGTGATTCAGACATAGTTTGCATTAATGCATTACATAATGAAATAACTGACGAATACTTCGTTGCTATTGGCTTTGTAAAGGAAGGAGAAAAAGGATATCTTAATATATACAGATCAAAGTCAGAAGAAAAGTTACCGGAAAATTGTC]

[+] EMBL CD139443             [TAGGTCTACAGACATATGTAGAATTATTCCACTTTCCATCGTTGGCTCGGTCAAATGTTTTCAACTTAACGTTTCTGAAGTCTGATGCTGCAAAAAGATCAAAAACTAATCGAAAAACGTACGACATACTGGTCGCATTTTTCCGCCCAGTAAGCGATCCACTAGCCAGCAAGTATTCCTTTAGTATACACCATTTCGATGTAGAAGACAAAATTATTCAGCCACTAACTAAAACTATTGATTTTGCCTACTTACCAGGTGATTCAGACATAGTTTGCATTAATGCATTACATAATGAAATAACTGACGAATACTTCGTTGCTATTGGCTTTGTAAAGGAAGGAGAAAAAGGATATCTTAATATATACAGATCAAAGTCAGAAGAAAAGTTACCGGAAAATTGTC]




>consensus_4312#1
TAGGTCTACAGACATATGTAGAATTATTCCACTTTCCATCGTTGGCTCGGTCAAATGTTT
TCAACTTAACGTTTCTGAAGTCTGATGCTGCAAAAAGATCAAAAACTAATCGAAAAACGT
ACGACATACTGGTCGCATTTTTCCGCCCAGTAAGCGATCCACTAGCCAGCAAGTATTCCT
TTAGTATACACCATTTCGATGTAGAAGACAAAATTATTCAGCCACTAACTAAAACTATTG
ATTTTGCCTACTTACCAGGTGATTCAGACATAGTTTGCATTAATGCATTACATAATGAAA
TAACTGACGAATACTTCGTTGCTATTGGCTTTGTAAAGGAAGGAGAAAAAGGATATCTTA
ATATATACAGATCAAAGTCAGAAGAAAAGTTACCGGAAAATTGTC

consensusID : consensus_4312#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 330
fasta sequence

                              [AAGGCTTTTGTTGACTGGAAGTTTCGCTAAAAGGTTCACCATAAGACAAAAAGAATGCCCACTGATCTTCATCTTTGACGAGACAACTGGGCGGAAAAATGCGACCAGTATGTCGTACGTTTTTCGATTAGTTTTTGATCTTTTTGCAGCATCAGACTTCAGAAACGTTAAGTTGAAAACATTTGACTGAGCCAACGATGGAAAGTGGAATAATTCTACATATGTCTGTAGACCTAATGAGTTCATAGGTCCTGTGGACAGTTATCGATCAATCCACCAGAAGTAAACGAAATCAGAGTTGTAAGCTTTTTCGAGGAGAGACGTACTACA]

[+] EMBL CD140279             [AAGGCTTTTGTTGACTGGAAGTTTCGCTAAAAGGTTCACCATAAGACAAAAAGAATGCCCACTGATCTTCATCTTTGACGAGACAACTGGGCGGAAAAATGCGACCAGTATGTCGTACGTTTTTCGATTAGTTTTTGATCTTTTTGCAGCATCAGACTTCAGAAACGTTAAGTTGAAAACATTTGACTGAGCCAACGATGGAAAGTGGAATAATTCTACATATGTCTGTAGACCTAATGAGTTCATAGGTCCTGTGGACAGTTATCGATCAATCCACCAGAAGTAAACGAAATCAGAGTTGTAAGCTTTTTCGAGGAGAGACGTACTACA]




>consensus_4312#2
AAGGCTTTTGTTGACTGGAAGTTTCGCTAAAAGGTTCACCATAAGACAAAAAGAATGCCC
ACTGATCTTCATCTTTGACGAGACAACTGGGCGGAAAAATGCGACCAGTATGTCGTACGT
TTTTCGATTAGTTTTTGATCTTTTTGCAGCATCAGACTTCAGAAACGTTAAGTTGAAAAC
ATTTGACTGAGCCAACGATGGAAAGTGGAATAATTCTACATATGTCTGTAGACCTAATGA
GTTCATAGGTCCTGTGGACAGTTATCGATCAATCCACCAGAAGTAAACGAAATCAGAGTT
GTAAGCTTTTTCGAGGAGAGACGTACTACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4312#0      TTTGCCTACTTACCAGGTGATTCAGACATAGTTTGCATTAATGCATTACATAATGAAATA 60
consensus_4312#1      -------------TAGGTC-TACAGACATATGTAGAATTATTCCACTTTCCATCGTTGGC 46
consensus_4312#2      ------------------------------------------------------------
                                                                                  

consensus_4312#0      ACTGACGAATACTTCGTTGCTATTGGCTTTGTAAAGGAAGGAGAAAAAGGGNNNNNNNNN 120
consensus_4312#1      TCGGTCAAATGTTTTCAACTTAACGTTTCTGAAGTCTGATGCTGCAAAAAGATCAAAAAC 106
consensus_4312#2      -----AAGGCTTTTGTTGACTGGAAGTTTCGCTAAAAGGTTC-ACCATAAGACAAAAAGA 54
                                  **      *      *  *               *   *         

consensus_4312#0      NNNNNNNNNNNNNNNNNTCAGAAGAAAAGTTACCGGGTATGTTTTATACAGAAATCAATC 180
consensus_4312#1      TAATCGAAAAACGTACGACATAC------TGGTCGCAT-TTTTCCGCCCAGTAAGCGATC 159
consensus_4312#2      ATGCCCACTGATCTTCATCT---------TTGACGAGACAACTGGGCGGAAAAATG---C 102
                                        *          *   **       *      *  **     *

consensus_4312#0      AATAAGTATTTTGTGCAGAAAATTGTTTGAGTTATTCCAAGTTACCTTGTGCTCCTCTCC 240
consensus_4312#1      CACTAGCCA-----GCAAGTATTCCTTTAGTATACACCATTTCGATGTAGAAGACAAAAT 214
consensus_4312#2      GACCAGTAT-----GTCGTACGTTTTTCGATTAGTTTTTGATCTTTTTGCAGCATCAGAC 157
                       *  **        *       *  **              *     *            

consensus_4312#0      ATTTGACTCATGCA-CATTGGGCATTCTTTTTGTCTTATGGTGAACCTTTTAGCGAAACT 299
consensus_4312#1      TATTCAGCCACTAA-CTAAAACTATTGATTTTGCCT--------ACTTACCAGGTGA--- 262
consensus_4312#2      TTCAGAAACGTTAAGTTGAAAACATTTGACTGAGCC--------AACGATGGAAAGTGGA 209
                           *  *    *         ***    *   *         *               

consensus_4312#0      TCCAGTCAACAAAAGCCTTCAAATCAACCACAAGTCAAAATATTCTCTAAACTTATTGAT 359
consensus_4312#1      TTCAGACATAGTTTGCATT--AATGCATTACATAATGAAATAACTGACGAATACTTCGTT 320
consensus_4312#2      ATAATTCTACATATGTCTGTAGACCTA--ATGAGTTCATAGGTCCTGTGGACA----GTT 263
                         *  *       *  *    *   *  *       * *          *      * *

consensus_4312#0      ACTAATGTTTTTGAACAGGTTGAAATNNNNNNNNNNNNNNNNNNNNNNNAATTAAATTTG 419
consensus_4312#1      GCTATTGGCTTTGTAAAGGAAGGAGAAAAAGGATATCTTAATATATACAGATCAAAGTCA 380
consensus_4312#2      ATCGATCAATCCACCAGAAGTAAACGAAATCAGAGTTGTAAGCTTTTTCGAGGAGAGACG 323
                           *   *             *                          *  * *    

consensus_4312#0      TCTCAAAACTGTCATTCTAGTGCGGCTTATGGTGAATTACCATTTAATATTGCTGTGGTA 479
consensus_4312#1      GAAGAAAA--GTTACCGGAAAATTGTC--------------------------------- 405
consensus_4312#2      TACTACA----------------------------------------------------- 330
                          * *                                                     

consensus_4312#0      CTTTTCCCAGAGCTAACAAAATTACCGACGACATTAATTTTCCTACATATGGATTNTAAA 539
consensus_4312#1      ------------------------------------------------------------
consensus_4312#2      ------------------------------------------------------------
                                                                                  

consensus_4312#0      ATTATCACAAGATGGGTGGTTTGGTTTATTCTCTGTGGATATGAAATCTCGTAGAATATA 599
consensus_4312#1      ------------------------------------------------------------
consensus_4312#2      ------------------------------------------------------------
                                                                                  

consensus_4312#0      C 600
consensus_4312#1      -
consensus_4312#2      -