These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4330#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 249 fasta sequence [GTGTATTTATCACAAATAATGGGAACTACAAATTGAGTGATGTTGTGAGTGTAGCACAAGTTGATGTCAGGTGCCTGTTACTTCTCTTCGATGGACACTCGTCCCTTCTGCTTAGAACCCTTTATAAGTCCAGGTTTGTTCGTGAACTTCTTAACAATATTGCCAATCCAGGAGAATACGTTATTGGCGATTTCCATACCCGGACCCGCGACAACTGGATTCTGACATTCGAACGATACGACAAGTACA] [+] EMBL CD146050 [GTGTATTTATCACAAATAATGGGAACTACAAATTGAGTGATGTTGTGAGTGTAGCACAAGTTGATGTCAGGTGCCTGTTACTTCTCTTCGATGGACACTCGTCCCTTCTGCTTAGAACCCTTTATAAGTCCAGGTTTGTTCGTGAACTTCTTAACAATATTGCCAATCCAGGAGAATACGTTATTGGCGATTTCCATA ] [+] EMBL CD146066 [ TATCACAAATAATGGGAACTACAAATTGAGTGATGTTGTGAGTGTAGCACAAGTTGATGTCAGATGCCTGTTACTTCTCTTCGATGGACACTCGTCCCTTCTGCTTAGAACCCTTTATAAGTCCAGGTTTGTTCGTGAACTTCTTAACAATATTGCCAATCCAGGAGAATACGTTATTGGCGATTTCCATACCCGGACCCGCGACAACTGGATTCTGACATTCGAACGATACGACAAGTACA] consensusID : consensus_4330#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 210 fasta sequence [TCGATGACACTCGTCCTCTGCTAGAACCTTATAAGTCAGTTGTTCGTAACTCTTAACAATATTGCCAATCCAGGAGAATACGTTATTGGCGATTTCATACCCGCACCCGCGACAACTGGATTCTGACATTCGAACGATACGACGAAGTACAACCATGATGAGAGTTAGGAATTGGCATTGTAGTGGTTTGCTGTTGAAGTGAATGTTTCT] [-] EMBL SMAA14125 [TCGATGACACTCGTCCTCTGCTAGAACCTTATAAGTCAGTTGTTCGTAACTCTTAACAATATTGCCAATCCAGGAGAATACGTTATTGGCGATTTCATACCCGCACCCGCGACAACTGGATTCTGACATTCGAACGATACGACGAAGTACAACCATGATGAGAGTTAGGAATTGGCATTGTAGTGGTTTGCTGTTGAAGTGAATGTTTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4330#0 GTGTATTTATCACAAATAATGGGAACTACAAATTGAGTGATGTTGTGAGTGTAGCACAAG 60 consensus_4330#1 ------------------------------------------------------------ consensus_4330#0 TTGATGTCAGGTGCCTGTTACTTCTCTTCGATGGACACTCGTCCCTTCTGCTTAGAACCC 120 consensus_4330#1 ---------------------------TCGATG-ACACTCGTCC--TCTGCT-AGAACC- 28 ****** ********** ****** ****** consensus_4330#0 TTTATAAGTCCAGGTTTGTTCGTGAACTTCTTAACAATATTGCCAATCCAGGAGAATACG 180 consensus_4330#1 -TTATAAGTCAG---TTGTTCGTAA--CTCTTAACAATATTGCCAATCCAGGAGAATACG 82 ********* ******** * ******************************** consensus_4330#0 TTATTGGCGATTTCCATACCCGGACCCGCGACAACTGGATTCTGACATTCGAACGATACG 240 consensus_4330#1 TTATTGGCGATTTC-ATACCCGCACCCGCGACAACTGGATTCTGACATTCGAACGATACG 141 ************** ******* ************************************* consensus_4330#0 AC-AAGTACA-------------------------------------------------- 249 consensus_4330#1 ACGAAGTACAACCATGATGAGAGTTAGGAATTGGCATTGTAGTGGTTTGCTGTTGAAGTG 201 ** ******* consensus_4330#0 --------- consensus_4330#1 AATGTTTCT 210 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||