cluster # 4374

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Schistosoma mansoni
cluster # 4374 cluster # 4374 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4374#0 length = 586 sequences # 2

consensus_4374#1 length = 391 sequences # 1

consensusID : consensus_4374#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 586
fasta sequence

                              [TTATGATGAGAGGAACACGAATACGATTAGGTCAGTTATTTAACAACTATACAATAGGAAATAGGCATATTACATTTGTCCATAAACAGACCTCAGATTTGCCATTCATAATTCACCAGGGGATATAACACCTCCCCTTTTTGAGAAATCCGGATTTTAAATTTCTCGAATTCCTCCTCCCCCACGAAAGACTGTTGGATCCTCATATAGCCAAGTTACTATTAATGTGACATATAAAACATGTTTGTCATATTTAACAGAGAATCCATTAGAACTGACCAGATCATGAGGATCGACGACAATTGATTTGAGGTCACCAGCGTCTAATTCTTCTGGAACAATTTCCCTGAATTTATTCGGAACCTCATTAGTAGATAATGGATCATAATCAGTTTCTATGAAAAACGTATTGGATTCTTGATTATCATTTAATGCATCTGACATTTTTCTCCCACTTTTATAAGAGAGTTCAACAGGAACATATGAATCATCAAAATAATCTAAATCTGGCAGAACAATTAAAGAATCTTGATCATTAGATTCGTTAGAAACATTTTTCGCATTATTACTAGTTTCATTTGGCGCC]

[+] EMBL CD171059             [TTATGATGAGAGGAACACGAATACGATTAGGTCAGTTATTTAACAACTATACAATAGGAAATAGGCATATTACATTTGTCCATAAACAGACCTCAGATTTGCCATTCATAATTCACCAGGGGATATAACACCTCCCCTTTTTGAGAAATCCGGATTTTAAATTTCTCGAATTCCTCCTCCCCCACGAAAGACTGTTGGATCCTCATATAGCCAAGTTACTATTAATGTGACATATAAAACATGTTTGTCATATTTAACAGAGAATCCATTAGAACTGACCAGATCATGAGGATCGACGACAATTGATTTGAGGTCACCAGCGTCTAATTCTTCTGGAACAATTTCCCTGAATTTATTCGGAACCTCATTAGTAGATAATGGATCATAATCAGTTTCTATGAAAAACGTATTGGATTCTTGATTATCATTTAATGCATCTGACATTTTTCTCCCACTTTTATAAG                                                                                                                          ]
[+] EMBL CD071514             [                                                                                                                                                                                                  TTGGATCCTCATATAGCCAAGTTACTATTAATGTGACATATAAAACATGTTTGTCATATTTAACAGAGAATCCATTAGAACTGACCAGATCATGAGGATCGACGACAATTGATTTGAGGTCACCAGCGTCTAATTCTTCTGGAACAATTTCCCTGAATTTATTCGGAACCTCATTAGTAGATAATGAATCATAATCAGTTTCTATGANAAACGTATTGGATTCTTGATTATCATTTAATGCATCTGACATTTTTCTCCCACTTTTATAAGAGAGTTCAACAGGAACATATGAATCATCAAAATAATCTAAATCTGGCAGAACAATTAAAGAATCTTGATCATTAGATTCGTTAGAAACATTTTTCGCATTATTACTAGTTTCATTTGGCGCC]




>consensus_4374#0
TTATGATGAGAGGAACACGAATACGATTAGGTCAGTTATTTAACAACTATACAATAGGAA
ATAGGCATATTACATTTGTCCATAAACAGACCTCAGATTTGCCATTCATAATTCACCAGG
GGATATAACACCTCCCCTTTTTGAGAAATCCGGATTTTAAATTTCTCGAATTCCTCCTCC
CCCACGAAAGACTGTTGGATCCTCATATAGCCAAGTTACTATTAATGTGACATATAAAAC
ATGTTTGTCATATTTAACAGAGAATCCATTAGAACTGACCAGATCATGAGGATCGACGAC
AATTGATTTGAGGTCACCAGCGTCTAATTCTTCTGGAACAATTTCCCTGAATTTATTCGG
AACCTCATTAGTAGATAATGGATCATAATCAGTTTCTATGAAAAACGTATTGGATTCTTG
ATTATCATTTAATGCATCTGACATTTTTCTCCCACTTTTATAAGAGAGTTCAACAGGAAC
ATATGAATCATCAAAATAATCTAAATCTGGCAGAACAATTAAAGAATCTTGATCATTAGA
TTCGTTAGAAACATTTTTCGCATTATTACTAGTTTCATTTGGCGCC

consensusID : consensus_4374#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 391
fasta sequence

                              [TCTTCGGGACCAATTTCCGGGAATTTATTCGGAACCTCATTAGTAGATAATGAATCATAATCAGTTTCTATGAAAAACGTATTGGATTCTCGATTATCATTTAATACATCCGATATTTTTCTCCCATTTTCATAAGAGATTTGAATAGGAACATATGAATCAGCAAAATAATCGGGATCTGGCAGAACAATTAGATAATCTTGATCATTAGATTCATTAGAAAAATTTTTTGCATCATGACTGGTTTGATTTGGCGCCACTGTATTCACTATACTGCTCGGTTTGTTCCCCGTTTCTTCGTGGGCGGGTACTGCAGCAATTTTATGGGCGCTTAATAAGACATTGTCTTTCTGTGAACTGGACGATTCATTGTTCGCACGTTTTGTTTCAG]

[-] EMBL CD195528             [TCTTCGGGACCAATTTCCGGGAATTTATTCGGAACCTCATTAGTAGATAATGAATCATAATCAGTTTCTATGAAAAACGTATTGGATTCTCGATTATCATTTAATACATCCGATATTTTTCTCCCATTTTCATAAGAGATTTGAATAGGAACATATGAATCAGCAAAATAATCGGGATCTGGCAGAACAATTAGATAATCTTGATCATTAGATTCATTAGAAAAATTTTTTGCATCATGACTGGTTTGATTTGGCGCCACTGTATTCACTATACTGCTCGGTTTGTTCCCCGTTTCTTCGTGGGCGGGTACTGCAGCAATTTTATGGGCGCTTAATAAGACATTGTCTTTCTGTGAACTGGACGATTCATTGTTCGCACGTTTTGTTTCAG]




>consensus_4374#1
TCTTCGGGACCAATTTCCGGGAATTTATTCGGAACCTCATTAGTAGATAATGAATCATAA
TCAGTTTCTATGAAAAACGTATTGGATTCTCGATTATCATTTAATACATCCGATATTTTT
CTCCCATTTTCATAAGAGATTTGAATAGGAACATATGAATCAGCAAAATAATCGGGATCT
GGCAGAACAATTAGATAATCTTGATCATTAGATTCATTAGAAAAATTTTTTGCATCATGA
CTGGTTTGATTTGGCGCCACTGTATTCACTATACTGCTCGGTTTGTTCCCCGTTTCTTCG
TGGGCGGGTACTGCAGCAATTTTATGGGCGCTTAATAAGACATTGTCTTTCTGTGAACTG
GACGATTCATTGTTCGCACGTTTTGTTTCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4374#0      TTATGATGAGAGGAACACGAATACGATTAGGTCAGTTATTTAACAACTATACAATAGGAA 60
consensus_4374#1      ------------------------------------------------------------
                                                                                  

consensus_4374#0      ATAGGCATATTACATTTGTCCATAAACAGACCTCAGATTTGCCATTCATAATTCACCAGG 120
consensus_4374#1      ------------------------------------------------------------
                                                                                  

consensus_4374#0      GGATATAACACCTCCCCTTTTTGAGAAATCCGGATTTTAAATTTCTCGAATTCCTCCTCC 180
consensus_4374#1      ------------------------------------------------------------
                                                                                  

consensus_4374#0      CCCACGAAAGACTGTTGGATCCTCATATAGCCAAGTTACTATTAATGTGACATATAAAAC 240
consensus_4374#1      ------------------------------------------------------------
                                                                                  

consensus_4374#0      ATGTTTGTCATATTTAACAGAGAATCCATTAGAACTGACCAGATCATGAGGATCGACGAC 300
consensus_4374#1      ------------------------------------------------------------
                                                                                  

consensus_4374#0      AATTGATTTGAGGTCACCAGCGTCTAATTCTTCTGGAACAATTTCCCTGAATTTATTCGG 360
consensus_4374#1      ----------------------------TCTTCGGGACCAATTTCCGGGAATTTATTCGG 32
                                                  ***** *** ********  ************

consensus_4374#0      AACCTCATTAGTAGATAATGGATCATAATCAGTTTCTATGAAAAACGTATTGGATTCTTG 420
consensus_4374#1      AACCTCATTAGTAGATAATGAATCATAATCAGTTTCTATGAAAAACGTATTGGATTCTCG 92
                      ******************** ************************************* *

consensus_4374#0      ATTATCATTTAATGCATCTGACATTTTTCTCCCACTTTTATAAGAGAGTTCAACAGGAAC 480
consensus_4374#1      ATTATCATTTAATACATCCGATATTTTTCTCCCATTTTCATAAGAGATTTGAATAGGAAC 152
                      ************* **** ** ************ *** ******** ** ** ******

consensus_4374#0      ATATGAATCATCAAAATAATCTAAATCTGGCAGAACAATTAAAGAATCTTGATCATTAGA 540
consensus_4374#1      ATATGAATCAGCAAAATAATCGGGATCTGGCAGAACAATTAGATAATCTTGATCATTAGA 212
                      ********** **********   ***************** * ****************

consensus_4374#0      TTCGTTAGAAACATTTTTCGCATTATTACTAGTTTCATTTGGCGCC-------------- 586
consensus_4374#1      TTCATTAGAAAAATTTTTTGCATCATGACTGGTTTGATTTGGCGCCACTGTATTCACTAT 272
                      *** ******* ****** **** ** *** **** **********              

consensus_4374#0      ------------------------------------------------------------
consensus_4374#1      ACTGCTCGGTTTGTTCCCCGTTTCTTCGTGGGCGGGTACTGCAGCAATTTTATGGGCGCT 332
                                                                                  

consensus_4374#0      -----------------------------------------------------------
consensus_4374#1      TAATAAGACATTGTCTTTCTGTGAACTGGACGATTCATTGTTCGCACGTTTTGTTTCAG 391