cluster # 4377

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Schistosoma mansoni
cluster # 4377 cluster # 4377 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4377#0 length = 468 sequences # 1

consensus_4377#1 length = 328 sequences # 1
consensus_4377#2 length = 206 sequences # 1

consensusID : consensus_4377#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 468
fasta sequence

                              [TTTCCTCTTGATTAAGTACTTCTATGAAGTACACACATATCAAACTTATTTTTCAAACTTTTTTGGCGAAGAACTTATCATCGTCAGTTTATTCAAAAAAACTTTAAAGCAAAGTAATCTACTCAGTTTTAATTTAATGTAGAGGCCATTTAGCATAAAATTCCCTTTTAACATTTGCTTATTGTGTATAATATGTCAAAAAGAACTGACCAGTATATGTTGTTGTATACATGTATGTAAAACATGTTTATTTATGCTCACTTACTTACTGGTTAGCGTTTTCCTAGCGGGTTGGTTTTCTAAGGGATGGGGTCGCTAACCCCATGCCTAACCCTCCTCCCTTATCTGGGCTTAGGACCGGCAGTAGCCCCCGGAGGAGCTACAGGCAGATTTTCATCTATCCTACTGTGTATTGTTTTAATAGTAGTTGTATTTTAATGCACAAATAAAGTTATTTTAACTTTGAAT]

[+] EMBL CD185276             [TTTCCTCTTGATTAAGTACTTCTATGAAGTACACACATATCAAACTTATTTTTCAAACTTTTTTGGCGAAGAACTTATCATCGTCAGTTTATTCAAAAAAACTTTAAAGCAAAGTAATCTACTCAGTTTTAATTTAATGTAGAGGCCATTTAGCATAAAATTCCCTTTTAACATTTGCTTATTGTGTATAATATGTCAAAAAGAACTGACCAGTATATGTTGTTGTATACATGTATGTAAAACATGTTTATTTATGCTCACTTACTTACTGGTTAGCGTTTTCCTAGCGGGTTGGTTTTCTAAGGGATGGGGTCGCTAACCCCATGCCTAACCCTCCTCCCTTATCTGGGCTTAGGACCGGCAGTAGCCCCCGGAGGAGCTACAGGCAGATTTTCATCTATCCTACTGTGTATTGTTTTAATAGTAGTTGTATTTTAATGCACAAATAAAGTTATTTTAACTTTGAAT]




>consensus_4377#0
TTTCCTCTTGATTAAGTACTTCTATGAAGTACACACATATCAAACTTATTTTTCAAACTT
TTTTGGCGAAGAACTTATCATCGTCAGTTTATTCAAAAAAACTTTAAAGCAAAGTAATCT
ACTCAGTTTTAATTTAATGTAGAGGCCATTTAGCATAAAATTCCCTTTTAACATTTGCTT
ATTGTGTATAATATGTCAAAAAGAACTGACCAGTATATGTTGTTGTATACATGTATGTAA
AACATGTTTATTTATGCTCACTTACTTACTGGTTAGCGTTTTCCTAGCGGGTTGGTTTTC
TAAGGGATGGGGTCGCTAACCCCATGCCTAACCCTCCTCCCTTATCTGGGCTTAGGACCG
GCAGTAGCCCCCGGAGGAGCTACAGGCAGATTTTCATCTATCCTACTGTGTATTGTTTTA
ATAGTAGTTGTATTTTAATGCACAAATAAAGTTATTTTAACTTTGAAT

consensusID : consensus_4377#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 328
fasta sequence

                              [AAAGAAAAATGAATCTATCTTGTTCACTTCTGAAATAGTGGGNCCCATCTACTTTTTCATTTATCAAGTGGCCGGGCAATAAACCGAACACTTTTTTCCCGGAAAAAAAGTATCTATGGATTTAAAAACTCGTGGATGAATTACAATCGACTAATAACTAATGAAAAGAGTCAATTTCAAGAGAAGTTAGATGAAATGAACAACAGAGCTTTTAATGAAACGGCATCGATTGAAGAGTATTTCAATTGTATTACTAGAGTATTTAAATTACAGATTATCGATGAAATANATACAGAATGTGTGAAGANTATGGGAAACGTTGAAGATA]

[+] EMBL CD153476             [AAAGAAAAATGAATCTATCTTGTTCACTTCTGAAATAGTGGGNCCCATCTACTTTTTCATTTATCAAGTGGCCGGGCAATAAACCGAACACTTTTTTCCCGGAAAAAAAGTATCTATGGATTTAAAAACTCGTGGATGAATTACAATCGACTAATAACTAATGAAAAGAGTCAATTTCAAGAGAAGTTAGATGAAATGAACAACAGAGCTTTTAATGAAACGGCATCGATTGAAGAGTATTTCAATTGTATTACTAGAGTATTTAAATTACAGATTATCGATGAAATANATACAGAATGTGTGAAGANTATGGGAAACGTTGAAGATA]




>consensus_4377#1
AAAGAAAAATGAATCTATCTTGTTCACTTCTGAAATAGTGGGNCCCATCTACTTTTTCAT
TTATCAAGTGGCCGGGCAATAAACCGAACACTTTTTTCCCGGAAAAAAAGTATCTATGGA
TTTAAAAACTCGTGGATGAATTACAATCGACTAATAACTAATGAAAAGAGTCAATTTCAA
GAGAAGTTAGATGAAATGAACAACAGAGCTTTTAATGAAACGGCATCGATTGAAGAGTAT
TTCAATTGTATTACTAGAGTATTTAAATTACAGATTATCGATGAAATANATACAGAATGT
GTGAAGANTATGGGAAACGTTGAAGATA

consensusID : consensus_4377#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 206
fasta sequence

                              [CAATGTATACTTCAAAGTAGAATATGTAATTGTTTTGTCAAACAAAAAACAACAGTTGATAGCAACGCTATCAATAATAGTAAACTTTTAACATTACTTAAGTAAAGTTAGATAGTAACTAGCATAAGAAATTAAGACTAGCATTTCATACTATGCCCCCAAATCCCCTGGTACGGCCGAGAGTGAGGAGAGTCCGCTCTCCCTCT]

[+] EMBL CD064670             [CAATGTATACTTCAAAGTAGAATATGTAATTGTTTTGTCAAACAAAAAACAACAGTTGATAGCAACGCTATCAATAATAGTAAACTTTTAACATTACTTAAGTAAAGTTAGATAGTAACTAGCATAAGAAATTAAGACTAGCATTTCATACTATGCCCCCAAATCCCCTGGTACGGCCGAGAGTGAGGAGAGTCCGCTCTCCCTCT]




>consensus_4377#2
CAATGTATACTTCAAAGTAGAATATGTAATTGTTTTGTCAAACAAAAAACAACAGTTGAT
AGCAACGCTATCAATAATAGTAAACTTTTAACATTACTTAAGTAAAGTTAGATAGTAACT
AGCATAAGAAATTAAGACTAGCATTTCATACTATGCCCCCAAATCCCCTGGTACGGCCGA
GAGTGAGGAGAGTCCGCTCTCCCTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4377#0      TTTCCTCTTGATTAAGTACTTCTATGAAGTACACACATATCAAACTTATTTTTCAAACTT 60
consensus_4377#2      ------------------------------------------------------------
consensus_4377#1      -------------------------------AAAGAAAAATGAATCTATCTTGTTCACTT 29
                                                                                  

consensus_4377#0      TTTTGGCGAAGAACTTATCATCGTCAGTTTATTCAAAAAAACTTTAAAGCAAAGTAATCT 120
consensus_4377#2      --------------------------------CAATGTATACTTCAAAGTAGAATATGTA 28
consensus_4377#1      CTGAAATAGTGGGNC--CCATCTACTTTTTCATTTATCAAGTGGCCGGGCAATAAACCGA 87
                                                            *         * *    *    

consensus_4377#0      ACTCAGTTTTAATTTAATGTAGAGGCCATTTAGCATAAAATTCCCTTTTAACATTTGCTT 180
consensus_4377#2      ATT--GTTTTGTCAAACAAAAAACAACAGTTGATAGCAA---CGCTATCAATAATAGTAA 83
consensus_4377#1      ACACTTTTTTCCCGGAAAAAAAGTATCTATGGATTTAAAAA-CTCGTGGATGAATTACAA 146
                      *     ****     *    *     *  *       **   * *    *  * *     

consensus_4377#0      ATTGTGTATAATATGTCAAAAAGAACTGACCAGTATATGTTGTTGTATACATGTATGTAA 240
consensus_4377#2      ACTTTTAACATTAC-TTAAGTAAAGTTAGATAGTA---ACTAGCATAAGAAATTAAGACT 139
consensus_4377#1      TCGACTAATAAC-TAATGAAAAGAGTCAATTTCAAGA-GAAGTTAGATGAA---ATGAAC 201
                             * *        *  * *          *           *   *   * *   

consensus_4377#0      AACATGTTTATTTATGCTCACTTACTTACTGGTTAG--CGTTTTCCTAGCGGGTTGGTTT 298
consensus_4377#2      AGCATTTCATACTATGCCCCCAAATCCCCTGGTACGGCCGAGAGTGAGGAGAGTCCGCTC 199
consensus_4377#1      AACAGAGCTTTTAATGAAACGGCATCGATTGAAGAGTATTTCAATTGTATTACTAGAGTA 261
                      * **         ***       *     **    *                 *    * 

consensus_4377#0      TCTAAGGGATGGGGTCGCTAACCCCATGCCTAACCCTCCTCCCTTATCTGGGCTTAGGAC 358
consensus_4377#2      TCCCTCT----------------------------------------------------- 206
consensus_4377#1      TTTAAATTACAGA-TTATCGATGAAATANATACAGAATGTGTGAAGANTATGGGAAACGT 320
                      *                                                           

consensus_4377#0      CGGCAGTAGCCCCCGGAGGAGCTACAGGCAGATTTTCATCTATCCTACTGTGTATTGTTT 418
consensus_4377#2      ------------------------------------------------------------
consensus_4377#1      TGAAGATA---------------------------------------------------- 328
                                                                                  

consensus_4377#0      TAATAGTAGTTGTATTTTAATGCACAAATAAAGTTATTTTAACTTTGAAT 468
consensus_4377#2      --------------------------------------------------
consensus_4377#1      --------------------------------------------------