These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4378#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 566 fasta sequence [TCGGAGTCAACGTGTACGCTCTTGCTCCGCCCCGACGGTGCACAGGGAGGAGGTCACATGTCTACGTCATGGGACGGGCCGGTGATGCGCCCGCTGCTCGCAACTTGGAAAGTATGAGCAAGACAACAGGATCTCACCTTAGTCCGGACAAGCCGAACCTTTACCTTCACCTCGCCTTTGGGTTTCGTAACACCCAATGAAACCCCATCAATCCGGAATTCAAAATCAAGTAAGCTTTTGCCCTTTTACTCTACGCCAGGTTTCTGTCCTGACTGAGCTCACCATAGGACACCCGCGTTACCATTTGACGGATGTACCGCCCCAGTCAAACTCCCCGCCTGACATGGTCTTCAGAACGGGTCGCACATCACATCAAGACTCAAACACCGCAATTCGCACCACGACTCATCTGACATGATCAAGATATCGAAGCACGCAGCGATAGACCACGCACCCCGAAATGTGCTTTGAACCAAAATACAATTTCGTTCCCGTTTCGCTGAATAAGTAAAGAAACAATGATAGCAGTGGTATTTCATTGCGGGGAAACCTCTCTAATCGAATCC] [+] EMBL BG932161 [TCGGAGTCAACGTGTACGCTCTTGCTCCGCCCCGACGGTGCACAGGGAGGAGGTCACATGTCTACGTCATGGGACGGGCCGGTGATGCGCCCGCTGCTCGCAACTTGGAAAGTATGAGCAAGACAACAGGATCTCACCTTAGTCCGGACAAGCCGAACCTTTACCTTCACCTCGCCTTTGGGTTTCGTAACACCCAATGAAACCCCATCAATCCGGAATTCAAAATCAAGTAAGCTTTTGCCCTTTTACTCTACGCCAGGTTTCTGTCCTGACTGAGCTCACCATAGGACACCCGCGTTACCATTTGACGGATGTACCGCCCCAGTCAAACTCCCCGCCTGACATGGTCTTCAGAACGGGTCGCACATCACATCAAGACTCAAACACCGCAATTCGCACCACGACTCATC ] [-] EMBL CD191013 [ CCGCGTTACCATTTGACGGATGTACCGCCCCAGTCAAACTCCCCGCCTGACATGGTCTTCAGAACGGGTCGCACATCACATCAAGACTCAAACACCGCAATTCGCACCACGACTCATCTGACATGATCAAGATATCGAAGCACGCAGCGATAGACCACGCACCCCGAAATGTGCTTTGAACCAAAATACAATTTCGTTCCCGTTTCGCTGAATAAGTAAAGAAACAATGATAGCAGTGGTATTTCATTGCGGGGAAACCTCTCTAATCGAATCC] consensusID : consensus_4378#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 226 fasta sequence [GCGTTACCATTTGACGGATGTACCGCCCCAGTCAAACTCCCCGCCTGACATGGTCTTCAGAACGGGTCGCACATCACATCAAGACTCCAACACCGCAATTCGCACCACGACTCATCTGACATGACCAAGATATCGAAGCACGCAGCGATAGACCACGCACCCCGAAATGTGCTTTGAACCAAAATACAATTTCGTTACCCGTTTCCGGTCAATCTTGTTGGACGTA] [-] EMBL CD063750 [GCGTTACCATTTGACGGATGTACCGCCCCAGTCAAACTCCCCGCCTGACATGGTCTTCAGAACGGGTCGCACATCACATCAAGACTCCAACACCGCAATTCGCACCACGACTCATCTGACATGACCAAGATATCGAAGCACGCAGCGATAGACCACGCACCCCGAAATGTGCTTTGAACCAAAATACAATTTCGTTACCCGTTTCCGGTCAATCTTGTTGGACGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4378#0 TCGGAGTCAACGTGTACGCTCTTGCTCCGCCCCGACGGTGCACAGGGAGGAGGTCACATG 60 consensus_4378#1 ------------------------------------------------------------ consensus_4378#0 TCTACGTCATGGGACGGGCCGGTGATGCGCCCGCTGCTCGCAACTTGGAAAGTATGAGCA 120 consensus_4378#1 ------------------------------------------------------------ consensus_4378#0 AGACAACAGGATCTCACCTTAGTCCGGACAAGCCGAACCTTTACCTTCACCTCGCCTTTG 180 consensus_4378#1 ------------------------------------------------------------ consensus_4378#0 GGTTTCGTAACACCCAATGAAACCCCATCAATCCGGAATTCAAAATCAAGTAAGCTTTTG 240 consensus_4378#1 ------------------------------------------------------------ consensus_4378#0 CCCTTTTACTCTACGCCAGGTTTCTGTCCTGACTGAGCTCACCATAGGACACCCGCGTTA 300 consensus_4378#1 ------------------------------------------------------GCGTTA 6 ****** consensus_4378#0 CCATTTGACGGATGTACCGCCCCAGTCAAACTCCCCGCCTGACATGGTCTTCAGAACGGG 360 consensus_4378#1 CCATTTGACGGATGTACCGCCCCAGTCAAACTCCCCGCCTGACATGGTCTTCAGAACGGG 66 ************************************************************ consensus_4378#0 TCGCACATCACATCAAGACTCAAACACCGCAATTCGCACCACGACTCATCTGACATGATC 420 consensus_4378#1 TCGCACATCACATCAAGACTCCAACACCGCAATTCGCACCACGACTCATCTGACATGACC 126 ********************* ************************************ * consensus_4378#0 AAGATATCGAAGCACGCAGCGATAGACCACGCACCCCGAAATGTGCTTTGAACCAAAATA 480 consensus_4378#1 AAGATATCGAAGCACGCAGCGATAGACCACGCACCCCGAAATGTGCTTTGAACCAAAATA 186 ************************************************************ consensus_4378#0 CAATTTCGTT-CCCGTTTC-GCTGAATAAGTAAAGAAACAATGATAGCAGTGGTATTTCA 538 consensus_4378#1 CAATTTCGTTACCCGTTTCCGGTCAATCTTGTTGGACGTA-------------------- 226 ********** ******** * * *** ** * consensus_4378#0 TTGCGGGGAAACCTCTCTAATCGAATCC 566 consensus_4378#1 ---------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||