These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_439#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 299 fasta sequence [AAACACCCAGATTGCAACTGATAAGTATCAGGTTCAATCAGTGCTCCATTTACTCCGGTTTTTTCTCAGCCTACTCACATAAAAAATATTTGACTCAAAGCTGGGTACGTAAACTGTAATGAATAAATGAGTTAAATTATTGTTATTATTCACTTGTTATTGTTTGGTTGAATCTTCCCATTGACGTTTCTGACTGCAATCGGTCAGTACTGGGTTCGAGTCCCAGAGTGAATATCAACTCTGAGATGCAGTTACATCCAGCTGACGAGCCCCGAATAGGACGAAACACGCGTCCTGGA] [+] EMBL CD136185 [AAACACCCAGATTGCAACTGATAAGTATCAGGTTCAATCAGTGCTCCATTTACTCCGGTTTTTTCTCAGCCTACTCACATAAAAAATATTTGACTCAAAGCTGGGTACGTAAACTGTAATGAATAAATGAGTTAAATTATTGTTATTATTCACTTGTTATTGTTTGGTTGAATCTTCCCATTGACGTTTCTGACTGCAATCGGTCAGTACTGGGTTCGAGTCCCAGAGTGAATATCAACTCTGAGATGCAGTTACATCCAGCTGACGAGCCCCGAATAGGACGAAACACGCGTCCTGGA] consensusID : consensus_439#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 155 fasta sequence [GAAGTACAGATTGTTCGAGGTGAGCGAAAGGATTGCAACCCCGCAAAGGTCATCCGTGTTTACCGGACGAAATATGTAATCCACATCGGGAGGCTACAATGTCGTAAAATGAATGGAGCAAAAGCAGAACGTTGTTAAGGCGGCGGGGAAGACGC] [+] EMBL CD184254 [GAAGTACAGATTGTTCGAGGTGAGCGAAAGGATTGCAACCCCGCAAAGGTCATCCGTGTTTACCGGACGAAATATGTAATCCACATCGGGAGGCTACAATGTCGTAAAATGAATGGAGCAAAAGCAGAACGTTGTTAAGGCGGCGGGGAAGACGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_439#0 AAACACCCAGATTGCAACTGATAAGTATCAGGTTCAATCAGTGCTCCATTTACTCCGGTT 60 consensus_439#1 ------------------------------------------------------------ consensus_439#0 TTTTCTCAGCCTACTCACATAAAAAATATTTGACTCAAAGCTGGGTACGTAAACTGTAAT 120 consensus_439#1 -------------------------------------------GAAGTACAGATTGTTCG 17 * * * *** consensus_439#0 GAATAAATGAGTTAAATTATTGTTATTATTCACTTGTTATTGTTTGGTTGAATCTTCCCA 180 consensus_439#1 ----AGGTGAGCGAAAGGATTGCAACCCCGCAAAGGTCAT-------CCGTGTTTACCGG 66 * **** *** **** * ** ** ** * * * ** consensus_439#0 TTGACGTTTCTGACTGCAATCGGTCAGTACTGGGTTCGAGTCCCAGAGTGAAT--ATCAA 238 consensus_439#1 ACGAAATATGTAATCCACATCGG--GAGGCTACAAT---GTCGTAAAATGAATGGAGCAA 121 ** * * * * ***** ** * *** * * ***** * *** consensus_439#0 CTCTGAGATGCAGTTACATCCAGCTGACGAGCCCCGAATAGGACGAAACACGCGTCCTGG 298 consensus_439#1 AAGCAGAACGTTGTTA-AGGCGGCGGGGAAGACGC------------------------- 155 * * **** * * ** * ** * * consensus_439#0 A 299 consensus_439#1 - |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||