These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4391#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 832 fasta sequence [CATTTCAATTTAGTGTTGCTTAGATTTTTGGCAATTAAACTGTTATGCGTACTTATTTCTAGGTTAAATGTCAAAAGCACCAAAAGAAAAAGAAATTGGTGCAGTTCGCTTACAACTTTTGGTTGACAAAATTACTACATCTGGTTCCAATAACGCTGATTGTTCACTAGTTGAAGAGACCGTAAATATATGCAGCAAATCAAGTTCTACTGTTTCTGATTTATTTCGATTTGCTACTGTTCAATTACGCCGTAATCATGCTCAGATTCGACTTGGCGTGTTAACATTACTTAGATTATTATCTTCTCCCCAAGCGATCGTTCGTCAGTTAACTCTTAGTATAAATGATGCAATCAAATTCATTCCTTTAGCGAAGTGTCTTCGTAACTTGATTTTAGATAATTTGCAGGATACTTTTTCATATATGGTACAGTTAGAATCATATTCTGCGCCTATTCTTTTACC-AAAGAAGCCCGCT-AAGAATTACAGTTTGAAGCAATAGAACTTCTGCTTGATTGGGAGTATGAATTAGAACAAGGATATTTTGATGTTACTCCTTGGAATCCTGACCCATCCCCGCCCCTATCATGGGTACCATCACAGAGAGCCAAAGGTCAATTGAAAGCATTTATAAATTTCCTCAATTTGGATAGTCGGCCTTTGGGTAATGATTGTTCTGGATATTGTCCAACAAAACAACTAATAAAAAAGATACAAGAACAACGTCAACAAAAGTCTCAATTGTTCAAGAGTCAAGTGATAAAATCTCATCGCCTTCTTGATGATTGCCTGAATGAAATCGAAGATGTAGCGAGTCGGTTGAAGAAAATTA] [+] EMBL CD162336 [CATTTCAATTTAGTGTTGCTTAGATTTTTGGCAATTAAACTGTTATGCGTACTTATTTCTAGGTTAAATGTCAAAAGCACCAAAAGAAAAAGAAATTGGTGCAGTTCGCTTACAACTTTTGGTTGACAAAATTACTACATCTGGTTCCAATAACGCTGATTGTTCACTAGTTGAAGAGACCGTAAATATATGCAGCAAATCAAGTTCTACTGTTTCTGATTTATTTCGATTTGCTACTGTTCAATTACGCCGTAATCATGCTCAGATTCGACTTGGCGTGTTAACATTACTTAGATTATTATCTTCTCCCCAAGCGATCGTTCGTCAGTTAACTCTTAGTATAAATGATGCAATCAAATTCATTCCTTTAGCGAAGTGTCTTCGTAACTTGATTTTAGATAATTTGCAGGATACTTTTTCATATATGGTACAGTTAGAATCATATTCTGCGCCTATTCTTTTACC AAAGAAGCCCGCT AAGAATT ] [+] EMBL AI067714 [ AATTTGCAGGATACTTTTTCATATATGGTACAGTTAGAATCATATTCTGCGCCTATTCTTTTACCAAAAGAAG CCGCTAAAGAATTACAGTTTGAAGCAATAGAACTTCTGCTTGATTGGGAGTATGAATTAGAACAAGGATATTTTGATGTTACTCCTTGGAATCCTGACCCATCCCCGCCCCTATCATGGGTACCATCACAGAGAGCCAAAGGTCAATTGAAAGCATTTATAAATTTCCTCAATTTGGATAGTCGGCCTTTGGGTAATGATTGTTCTGGATATTGTCCAACAAAACAACTAATAAAAAAGATACAAGAACAACGTCAACAAAAGTCTCAATTGTTCAAGAGTCAAGTGATAAAATCTCATCGCCTTCTTGATGATTGCCTGAATGAAATCGAAGATGTAGCGAGTCGGTTGAAGAAAATTA] consensusID : consensus_4391#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 482 fasta sequence [TAAGTATTATGTAATATCAATAATAATAAAGTAATTATTATTGGTAATGACGGTTCTACATAGTAGGTGATTTATAAACAGTAGATAGGTGTTTACTGACTCTTGAGGGTGCAACACGAAGCAAGACTGGTCATAACGGTAATCTAAAATGCCATTTCTTCCCAGCGCCAGTTTAGTTCCAGTGTTCGTTCCGAAAATTTGCTATCAGCGATACTACATTTCAACAGCTAGTCAGTCATATAAGTGGAAACCTCACCCCTTACACAATGGCATTGTAGTGCCGCGATTCGTTAATCGTTTACTTCGATAACCGTTATAATTCTAAACTTAACGGTGCGTAAAATCAGAAGACGAAGGATAGCAGCAACTACAGTTTATTGTCGAATAACTCAGATCAAAAAGCTAACAACACCTGAGCGAATATCAACGAGCGAGCGGCAAGCGAGAGAGCGAGGGAACAGGCGGACAAGCGAAGGAAACGA] [+] EMBL CD098113 [TAAGTATTATGTAATATCAATAATAATAAAGTAATTATTATTGGTAATGACGGTTCTACATAGTAGGTGATTTATAAACAGTAGATAGGTGTTTACTGACTCTTGAGGGTGCAACACGAAGCAAGACTGGTCATAACGGTAATCTAAAATGCCATTTCTTCCCAGCGCCAGTTTAGTTCCAGTGTTCGTTCCGAAAATTTGCTATCAGCGATACTACATTTCAACAGCTAGTCAGTCATATAAGTGGAAACCTCACCCCTTACACAATGGCATTGTAGTGCCGCGATTCGTTAATCGTTTACTTCGATAACCGTTATAATTCTAAACTTAACGGTGCGTAAAATCAGAAGACGAAGGATAGCAGCAACTACAGTTTATTGTCGAATAACTCAGATCAAAAAGCTAACAACACCTGAGCGAATATCAACGAGCGAGCGGCAAGCGAGAGAGCGAGGGAACAGGCGGACAAGCGAAGGAAACGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4391#0 CATTTCAATTTAGTGTTGCTTAGATTTTTGGCAATTAAACTGTTATGCGTACTTATTTCT 60 consensus_4391#1 ------------------------------------------------------------ consensus_4391#0 AGGTTAAATGTCAAAAGCACCAAAAGAAAAAGAAATTGGTGCAGTTCGCTTACAACTTTT 120 consensus_4391#1 ----------------------------------------------TAAGTATTATGTAA 14 ** * * consensus_4391#0 GGTTGACAAAATTACTACATCTGGTTCCAATAACGCTGATTGTTCACTAGTTGAAGAGAC 180 consensus_4391#1 TATCAATAATAATAAAGTAATTATTATTGGTAATGACGGTTCTACA-TAGT--AGGTGAT 71 * * ** * ** * * * *** * * ** * ** **** * * ** consensus_4391#0 CGTAAATATATGCAGCAAATCAAGTTCTACTGTTTCT----GATTTATTTCGATTTGCTA 236 consensus_4391#1 T-----TATAAACAGTAGATAGGTGTTTACTGACTCTTGAGGGTGCAACACGAAGCAAGA 126 **** *** * ** * ***** *** * * * *** * consensus_4391#0 CTGTTCAATTACGCCGTAATCATGCTCAGATTCGACTTGGCGTGTTAACATTACTTAGAT 296 consensus_4391#1 CTGGTCA-TAACG--GTAAT----CTAAAATGCCATTT--CTTCCCAGCGCCAGTTTAGT 177 *** *** * *** ***** ** * ** * * ** * * * * * ** * consensus_4391#0 TATTATCTTCTCCCCAAGCGATCGTTCGTCAGTTAACTCTTAGTATAAATGATGCAATCA 356 consensus_4391#1 TCCAGTGTTCGTTCCGAAAATTTGCT-ATCAGCGA-----TACTACATTTCA-ACAGCTA 230 * * *** ** * * * * **** * ** ** * * * ** * consensus_4391#0 AATTCATTCCTTTAGCGAAGTGTCTTCGTAACTTGATTTTAGATAATTTGCAGGATACTT 416 consensus_4391#1 G--TCAGTCATATAA-GTGGAAACCTCACCCCTTACACAATGGCA--TTGTAGTGCCGCG 285 *** ** * ** * * * ** *** * * *** ** consensus_4391#0 TTTCATATATGGTACAGTTAGAATCATATTCTGCGCCTATTCTTTTACCAAAGAAGCCCG 476 consensus_4391#1 ATTCGTTAATCGTTTACTTCGATAACCGTTATAATTCTAAACTT---------AACGGTG 336 *** * ** ** * ** ** ** * *** *** ** * consensus_4391#0 CTAAGAATTACAGTTTGAAG--CAATAGAACTTCTGCTTGATTGGGAGTATGAATTAGAA 534 consensus_4391#1 CGTAAAATCAGAAGACGAAGGATAGCAGCAACTACAGTTTATTGTC-GAATAACTCAGAT 395 * * *** * * **** * ** * * ** **** * ** * * *** consensus_4391#0 CAAGGATATTTTGATGTTACTCCTTGGAATCCTGACCCATCCCCGCCCCTATCATGGGTA 594 consensus_4391#1 CAAAAAG---CTAACAACACCTGAGCGAATATCAAC--GAGCGAGCGGCAAGCGAGAGAG 450 *** * * * ** **** ** * ** * * * * * consensus_4391#0 CCATCACAGAGAGCCAAAGGTCAATTGAAAGCATTTATAAATTTCCTCAATTTGGATAGT 654 consensus_4391#1 CGA-----GGGAACAGGCGGACAAGCGAAGGAAACGA----------------------- 482 * * * ** * ** *** *** * * * consensus_4391#0 CGGCCTTTGGGTAATGATTGTTCTGGATATTGTCCAACAAAACAACTAATAAAAAAGATA 714 consensus_4391#1 ------------------------------------------------------------ consensus_4391#0 CAAGAACAACGTCAACAAAAGTCTCAATTGTTCAAGAGTCAAGTGATAAAATCTCATCGC 774 consensus_4391#1 ------------------------------------------------------------ consensus_4391#0 CTTCTTGATGATTGCCTGAATGAAATCGAAGATGTAGCGAGTCGGTTGAAGAAAATTA 832 consensus_4391#1 ---------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||