These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4392#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 597 fasta sequence [TGCCTGGAGGTATTGGTGATCCACTGCTACTAGACACGGAAGCCGGTTAAGCGAAAGCTTCTTCTATTCCGTCGTCAACCATTTGAACCATTTGAACGTAAGGCGCTAAAGTACACTAAAGTACATTTGTCACTGAATGTTGATTGCTGTTCAACAGATGATGAAAAAGGATAATAACACAAGTTCAACCATATATCTCAATAAAACCTTACAAAATAAGATCATTGTGAATAGCACATGTGAACAGAAAAGACAGGATTTGTCAGTTTCATGGTCGCCAAATGTCAATCTCTCAAACTGGAAACTTATATTTGTGTTTGGAGAGGATTCTGAAAGATATGACCTGGAACGCATAGGCGTTACTTACACAACAATTAAAGGCAATGAAATTGATGCTAATACAGATAGAGGTTTGTTCACTATTCCTGTTGGTGGATATTATGAATGTGCCAGTCGTTTGCATAGAGAACTATTCGTGGAAGATAATGATAATATAATGATCAATATTTATTTTTTAAACTCATCAATGGAAGCATTCAGACTTGAAAATCGTCGAGAATTTATGGGCCATGCCATAGATTGTCCATTGAGTATCTT] [+] EMBL CD078756 [TGCCTGGAGGTATTGGTGATCCACTGCTACTAGACACGGAAGCCGGTTAAGCGAAAGCTTCTTCTATTCCGTCGTCAACCATTTGAACCATTTGAACGTAAGGCGCTAAAGTACACTAAAGTACATTTGTCACTGAATGTTGATTGCTGTTCAACAGATGATGAAAAAGGATAATAACACAAGTTCAACCATATATCTCAATAAAACCTTACAAAATAAGATCATTGTGAATAGCACATGTGAACAGAAAAGACAGGATTTGTCAGTTTCATGGTCGCCAAATGTCAATCTCTCAAACTGGAAACTTATATTTGTGTTTGGAGAGGATTCTGAAAGATATGACCTGGAACGCATAGGCGTTACTTACACAACAATTAAAGGCAATGAAATTGATGCTAATACAGATAGAGGTTTGTTCACTATTCCTGTTGGTGGATATTATGAATGTGCCAGTCGTTTGCATAGAGAACTATTCGTGGAAGATAATGATAATATAATGATCAATATTTATTTTTTAAACTCATCAATGGAAGCATTCAGACTTGAAAATCGTCGAGAATTTATGGGCCATGCCATAGATTGTCCATTGAGTATCTT] consensusID : consensus_4392#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 545 fasta sequence [TTGGTTTGGAATGAGGGTTTTCCAACTGCTCTAGATAGACTTTCCGTATCCACCAACCCGGTTAAAGCTCCGGACATTCGCTTTTCGTCCTCTCACTTTCGTAAACAACATCCCCGCCACGAGAATGCAGTGAGTAGGACTTCTCTGGCAGAGGCTATATAGGCGTGGCCATGTGAGAATCATTTCGAGAAGGAGAGCGGACTCTCTCCACTCTCGACCGTACCAGGGCATTTGGGGGCAATGACAGATTGATCAATCGCAGTTCTAAGCGTTAAAGGTAATATTCAAACAACTAATACAAAAATGAATAATTGTTTATTCAATGGCAATTATTGTAGGATACATTGATTGATTTCAATAATTTTCATAATAGATCTAAAATTTCTACCATAAATATTGAACCACATTTATTAACCCTAATACTTCATACTTTATATAAATAACCTTTAAGTGAAAAATCATCCGATTTAGAATTTCAGCTTAAGTTAGTTAATTATTACCTTCTATGTAGGCTACTACTCATTAATTTCATATTTATAAAACTA] [+] EMBL BF936808 [TTGGTTTGGAATGAGGGTTTTCCAACTGCTCTAGATAGACTTTCCGTATCCACCAACCCGGTTAAAGCTCCGGACATTCGCTTTTCGTCCTCTCACTTTCGTAAACAACATCCCCGCCACGAGAATGCAGTGAGTAGGACTTCTCTGGCAGAGGCTATATAGGCGTGGCCATGTGAGAATCATTTCGAGAAGGAGAGCGGACTCTCTCCACTCTCGACCGTACCAGGGCATTTGGGGGCAATGACAGATTGATCAATCGCAGTTCTAAGCGTTAAAGGTAATATTCAAACAACTAATACAAAAATGAATAATTGTTTATTCAATGGCAATTATTGTAGGATACATTGATTGATTTCAATAATTTTCATAATAGATCTAAAATTTCTACCATAAATATTGAACCACATTTATTAACCCTAATACTTCATACTTTATATAAATAACCTTTAAGTGAAAAATCATCCGATTTAGAATTTCAGCTTAAGTTAGTTAATTATTACCTTCTATGTAGGCTACTACTCATTAATTTCATATTTATAAAACTA] consensusID : consensus_4392#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 348 fasta sequence [TAAGAGTATAAGCAGTAANTCCGAAAGATTAATGTTTGAAGATGTTATTCAAGGAGTATAATCCAGTGAAATAAATTTGGAAAGAGAAAAAAGAAGGGGACATCAAGAATTCAGAAGTTTAGAATTTGCGAGAACAGAAAAAGTGGATGCACCTTCGCCATTGCAAACCATTTTGAACCATGTCATTCAAGATCTCTAACCATCGATTGCTATCATCTCGCGAACCCCAACCAGGTAGTCTACACCTACTAACATGGCTTAGTCGACTTGTCAGTGACTTTTACTACTTCATCAATCGATTCGCCATCCTTACCCAGTAACCGTCTCCTAACAACTGCATTACTTACT] [+] EMBL CD132010 [TAAGAGTATAAGCAGTAANTCCGAAAGATTAATGTTTGAAGATGTTATTCAAGGAGTATAATCCAGTGAAATAAATTTGGAAAGAGAAAAAAGAAGGGGACATCAAGAATTCAGAAGTTTAGAATTTGCGAGAACAGAAAAAGTGGATGCACCTTCGCCATTGCAAACCATTTTGAACCATGTCATTCAAGATCTCTAACCATCGATTGCTATCATCTCGCGAACCCCAACCAGGTAGTCTACACCTACTAACATGGCTTAGTCGACTTGTCAGTGACTTTTACTACTTCATCAATCGATTCGCCATCCTTACCCAGTAACCGTCTCCTAACAACTGCATTACTTACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4392#1 TTGGTTTGGAATGAGGGTTTTCCAACTGCTCTAGATAGACTTTCCGTATCCACCAACCCG 60 consensus_4392#2 ------------------------------------------------------------ consensus_4392#0 ----------TGCCTGGAGGTATTGGTGATCCACTGCTACTAGACACGGAAGCCGGTTAA 50 consensus_4392#1 GTTAAAGCTCCGGACATTCGCTTTTCGTCC-TCTCACTTTCGTAAACAACATCCCCGCCA 119 consensus_4392#2 ------------------------------------------------------------ consensus_4392#0 GCGAAAGCTTCTTCTATTCCGTCGTCAACCATTTGAACCATTTGAACGTAAGGCGCTAAA 110 consensus_4392#1 CGAGAATGCAGTGAGTAGGACTTCTCTGGCAGAG-GCTATATAGGCGTGGCCATGTGAGA 178 consensus_4392#2 ------------------------------TAAG-AGTATA-AGCAGTAANTCCGAAAGA 28 consensus_4392#0 GTACACTAAAGTACATTTGTCACTGAATGTTGATTGCTGTTCAACAGATGATGAAAAAGG 170 * * * * * ** consensus_4392#1 ATCATTTCGAGAAGG--AGAGCGGA-CTCTCTCCACTCTCG-ACCGTACCAGGGCATTTG 234 consensus_4392#2 TTAATGTTTGAAGAT--GTTATTCA-AGGAGTATAATC-----CAGTGAAATAAATTTGG 80 consensus_4392#0 ATAATAACACAAGTTCAACCATATATCTCAATAAAACCTTACAAAATAAGATCATTGTGA 230 * ** * * * * * * * * consensus_4392#1 GGGGCAATGACAGATTGATCAATCGCAGTTCTAAGCGTTAAAGGTAATATTCAAACAACT 294 consensus_4392#2 AAAGAGAAAAAAGAAGGGGACATCAAGAATTCAGAAGTTTAGAAT----TTGCGAGAACA 136 consensus_4392#0 ATAGCACATGTGAACAGAAAAGACAGGATTTGTCAGTTTCATGGTCGCCAAATGTCAATC 290 * * * * * ** * * ** consensus_4392#1 AATACAAAAATGAATAATTGTTTATTCAATGGCAATTATTGTAGGATACATTGATTGATT 354 consensus_4392#2 GA---AAAAGTGGATGCACCTTCGC-CATTGCAAACCATTTTGAACCATGTCATTCAAGA 192 consensus_4392#0 TCTCAAACTGGAAACTTATATTTGT-GTTTGGAGAGGATTCTGAAAGATATGACCTGGAA 349 ** * ** ** * *** * * * consensus_4392#1 TCAATAATTTTCATAATAGATCTAAAATTTCTACCATAAAT--ATTGAACCACATTTATT 412 consensus_4392#2 TCTCTAACCATCG--ATTGCTATCATCTCGCGAACCCCAACCAGGTAGTCTACACCTACT 250 consensus_4392#0 CGCATAGGCGTTACTTACACAACAATTAAAGGCAATGAAATTGATGCTAATACAGATAGA 409 ** * * ** *** ** consensus_4392#1 AACCCTAATACTTCATACTTTATATAAATAACCTTTAAGTGAAAAATCATCCGATTTAGA 472 consensus_4392#2 AAC----ATGGCTTAGTCGACTTGTCAGTGACTTTTAC-TACTTCATCAATCGATTCGCC 305 consensus_4392#0 GGT-----TTGTTCACTATTCCTGTTGGTGGATATTAT-GAATGTGCCAGTCGTTTGCAT 463 * * * * * * *** ** ** ** consensus_4392#1 A------TTTCAGCTTAAGTTAGTTAATTATTACCTTCTA-TGTAGGCTACTACTCATTA 525 consensus_4392#2 A------TCCTTACCCAG--TAACCGTCTCCTAACAACTG-CATTACTTACT-------- 348 consensus_4392#0 AGAGAACTATTCGTGGAAGATAATGATAATATAATGATCAATATTTATTTTTTAAACTCA 523 * * * ** ** * * * consensus_4392#1 ATTTCATATTTATAAAACTA---------------------------------------- 545 consensus_4392#2 ------------------------------------------------------------ consensus_4392#0 TCAATGGAAGCATTCAGACTTGAAAATCGTCGAGAATTTATGGGCCATGCCATAGATTGT 583 consensus_4392#1 -------------- consensus_4392#2 -------------- consensus_4392#0 CCATTGAGTATCTT 597 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||