These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4395#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 428 fasta sequence [AATATTGTCAATATTATCCAAAACTCATACAATGGACTACAGTGCAAAGTGGTGCATGGAGGACAGCTGCTTTTCCAGTAAGGACCGGAGTCAAACAAGGCTGTCTACTCTCCCCATTTCTCTTCCTTCTAGTGCCTTCCTAGATTATGAAGAATTCGACATCTGACGGGAAATACGGAATACAATGGACTTCTCAGATTTTCTCAGATCTTTCTGTAGTATCTTAGTGAGGTGTTCTTTCCCGTCCGTCAGCACTTGGTTCTCCCCTGAAATCTTCCCAAATAGAACGTAGAGCATCTGTGCAGTTTTGTGTCTGTTTCCATTGCTTCAGCTGGTATATTTTCAGGACCTGCTGCTTTCTCACTCTTGATTTTTCTAATGGTTATCCTGATTTCTTTGATCTTTGGTGGAATGACATCTATAGGAAT] [+] EMBL CD177844 [AATATTGTCAATATTATCCAAAACTCATACAATGGACTACAGTGCAAAGTGGTGCATGGAGGACAGCTGCTTTTCCAGTAAGGACCGGAGTCAAACAAGGCTGTCTACTCTCCCCATTTCTCTTCCTTCTAGTGCCTTCC ] [+] EMBL CD149619 [ CCAGTAAGGACCGGAGTCAGACAAGGCTGTCTACTCTCCCCATTCCTCTTCCTTCTAGTGATTGACTAGATTATGAAGAATTCGACATCTGACGGGAAATACGGAATACAATGGACTTCTCAGATTTTCTCAGATCTTTCTGTAGTATCTTAGTGAGGTGTTCTTTCCCGTCCGTCAGCACTTGGTTCTCCCCTGAAATCTTCCCAAATAGAACGTAGAGCATCTGTGCAGTTTTGTGTCTGTTTCCATTGCTTCAGCTGGTATATTTTCAGGACCTGCTGCTTTCTCACTCTTGATTTTTCTAATGGTTATCCTGATTTCTTTGATCTTTGGTGGAATGACATCTATAGGAAT] consensusID : consensus_4395#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 400 fasta sequence [ACTTTGCACTGTAGTCCTTCGTATGAGTTTTGGATAATGTTGACAATCTTTTGATGAACTCCATAGTGTCGAAGAAGTTTCCATAATGTTCTCCTGTCCACGCTGTCAAACGCCTTCTCATAGTCAATAAAGTTTCATCAGTGACATCAATCCTTGAAGTCACTAACTTCTAGTCTGAGCCATGTTGGGGTGAGCGTAACTATCGTAATCAATGGTTGGAGACTCCGGGTGATCTCCACCTTTTAGCATGCTAGCCGGAATACCATCTGGTCCATTAGTGTAGGAGTGCTTCAGTGTACTAATTGCCTTAGAGATATTTTTTACATTGAAGTCTACATTAGTAATTTCACAGGGAGGTGATGGGATTAGTTCTGAATCATTTAGTGGTTTTTCGTCAGTT] [+] EMBL CD096700 [ACTTTGCACTGTAGTCCTTCGTATGAGTTTTGGATAATGTTGACAATCTTTTGATGAACTCCATAGTGTCGAAGAAGTTTCCATAATGTTCTCCTGTCCACGCTGTCAAACGCCTTCTCATAGTCAATAAAGTTTCATCAGTGACATCAATCCTTGAAGTCACTAACTTCTAGTCTGAGCCATGTTGGGGTGAGCGTAACTATCGTAATCAATGGTTGGAGACTCCGGGTGATCTCCACCTTTTAGCATGCTAGCCGGAATACCATCTGGTCCATTAGTGTAGGAGTGCTTCAGTGTACTAATTGCCTTAGAGATATTTTTTACATTGAAGTCTACATTAGTAATTTCACAGGGAGGTGATGGGATTAGTTCTGAATCATTTAGTGGTTTTTCGTCAGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4395#0 AATATTGTCAATATTATCCAAAACTCATACAATGGACTACAGTGCAAAGTGGTGCATGGA 60 consensus_4395#1 ---------------------ACTTTGCACTGTAGTCCTTCGTATGA-GTTTTGGATA-A 37 * * ** * * * ** * ** ** ** * consensus_4395#0 GGACAGCTGCTTTTCCAGTAAGGAC-CGGAGTCAAACAAGGCTGTCTACTCTCCCCATTT 119 consensus_4395#1 TGTTGACAATCTTTTGATGAACTCCATAGTGTCGAAGAAGTTTCCATAATGTTCTCCTGT 97 * * *** * ** * * *** ** *** * ** * * * * * * consensus_4395#0 CTCTTCCTTCTAGTGCCTTCCTAGATTATGAAGAATTCGACATCTGACGGGAAATACGGA 179 consensus_4395#1 CCACGCTGTCAAACGCCTTCTCATAGTCAATAAAGTTTCATCAGTGACATCAATCCTTGA 157 * * ** * ****** * * * * * ** * **** ** ** consensus_4395#0 ATACAATGGACTTC--TCAGATTTTCTCAGATCTTTCTGTAG-TATCTTAGTGAGGTGTT 236 consensus_4395#1 AGTCACTAACTTCTAGTCTGAGCCATGTTGGGGTGAGCGTAACTATCGTAATCAATGGTT 217 * ** * * ** ** * * *** **** ** * * *** consensus_4395#0 CTTTCCCGTCCGTCAGCACTTGGTTCTCCCCTGAAATCTTCCCAAATAGAACGTAGAGCA 296 consensus_4395#1 GGAGACTCCGGGTGATCTCCACCTTTTAGCATGCTAG---CCGGAATACCATCTGGTCCA 274 * ** * * * ** * * ** * ** **** * * * ** consensus_4395#0 TCTGTGCAGTTTTGTGTCTGTTTCC--ATTGCTTCAGCTGGTATATTTTCAGGACCTGCT 354 consensus_4395#1 TTAGTGTAGGAGTGCTTCAGTGTACTAATTGCCTTAG---AGATATTTTTTACAT-TGAA 330 * *** ** ** ** ** * * ***** * ** ******* * ** consensus_4395#0 GCTTTCTCACTCTTGATTTTTCTAATGGTTATCCTGATT--TCTTTGATC-TTTGGTGGA 411 consensus_4395#1 GTCTAC--ATTAGTAATTTCACAGGGAGGTGATGGGATTAGTTCTGAATCATTTAGTGGT 388 * * * * * * **** * * * **** * * *** *** **** consensus_4395#0 ATGACATCTATAGGAAT 428 consensus_4395#1 TTTTCGTCAGTT----- 400 * * ** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||