cluster # 4405

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Schistosoma mansoni
cluster # 4405 cluster # 4405 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4405#0 length = 652 sequences # 1

consensus_4405#1 length = 356 sequences # 1
consensus_4405#2 length = 253 sequences # 1

consensusID : consensus_4405#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 652
fasta sequence

                              [CATGGAGTCCCGACCGTTGTTGCTACCTTGACGTGGTGGTCGGGCTTGCCTATCGTGATGAACCAGTCGAGCTAAACAGGCTGGAACAATCGTTCCTCAAGGTCCTACCATACCAGTCAGGCAGGTCAGTTGAAGAGCGGTAAGACTAAAAGCAGCAAACCCAATGTCCGAAGGCGAAGTCGTTCTGCTGACTGTATAGAGGTGTGACAGCAGTAAGGTTTTCCTTCAGACAACCAGCATAACAGTGATGCTGCCTTCCCACAAGGAGGGGTGGGGTTAGAAAAGGTCGACCCTAAAAATGCACACCTCGCCTTATCCCACAGACATCTGTCTCCGGCGGTAAGGTCCCAACAAGTATGGAGCTAAGACAAAATTCACCCACAAAAAGGTCGTGTGTGACCGACCCCAAGCAGTTGTCCCTTGGGAACTTCGGTCACGCTGTCAGGTCATTAAGACCACTTCTAACCCAATTTCCTTTTCAGGTACCTCTAGATAAACCCTTCCACGGTGTGGGCAACCGGGAAGTGATAACTGCCCTCATACTCTAACAGCACTCAAGACTGAACAATGGAGTGTAGGATGTGAATTNTGATTTGCATGGAACATATTAGTTTCATTTACCGGCTGAATCCCAATGTTGATGTTCAAATAT]

[+] EMBL CD127872             [CATGGAGTCCCGACCGTTGTTGCTACCTTGACGTGGTGGTCGGGCTTGCCTATCGTGATGAACCAGTCGAGCTAAACAGGCTGGAACAATCGTTCCTCAAGGTCCTACCATACCAGTCAGGCAGGTCAGTTGAAGAGCGGTAAGACTAAAAGCAGCAAACCCAATGTCCGAAGGCGAAGTCGTTCTGCTGACTGTATAGAGGTGTGACAGCAGTAAGGTTTTCCTTCAGACAACCAGCATAACAGTGATGCTGCCTTCCCACAAGGAGGGGTGGGGTTAGAAAAGGTCGACCCTAAAAATGCACACCTCGCCTTATCCCACAGACATCTGTCTCCGGCGGTAAGGTCCCAACAAGTATGGAGCTAAGACAAAATTCACCCACAAAAAGGTCGTGTGTGACCGACCCCAAGCAGTTGTCCCTTGGGAACTTCGGTCACGCTGTCAGGTCATTAAGACCACTTCTAACCCAATTTCCTTTTCAGGTACCTCTAGATAAACCCTTCCACGGTGTGGGCAACCGGGAAGTGATAACTGCCCTCATACTCTAACAGCACTCAAGACTGAACAATGGAGTGTAGGATGTGAATTNTGATTTGCATGGAACATATTAGTTTCATTTACCGGCTGAATCCCAATGTTGATGTTCAAATAT]




>consensus_4405#0
CATGGAGTCCCGACCGTTGTTGCTACCTTGACGTGGTGGTCGGGCTTGCCTATCGTGATG
AACCAGTCGAGCTAAACAGGCTGGAACAATCGTTCCTCAAGGTCCTACCATACCAGTCAG
GCAGGTCAGTTGAAGAGCGGTAAGACTAAAAGCAGCAAACCCAATGTCCGAAGGCGAAGT
CGTTCTGCTGACTGTATAGAGGTGTGACAGCAGTAAGGTTTTCCTTCAGACAACCAGCAT
AACAGTGATGCTGCCTTCCCACAAGGAGGGGTGGGGTTAGAAAAGGTCGACCCTAAAAAT
GCACACCTCGCCTTATCCCACAGACATCTGTCTCCGGCGGTAAGGTCCCAACAAGTATGG
AGCTAAGACAAAATTCACCCACAAAAAGGTCGTGTGTGACCGACCCCAAGCAGTTGTCCC
TTGGGAACTTCGGTCACGCTGTCAGGTCATTAAGACCACTTCTAACCCAATTTCCTTTTC
AGGTACCTCTAGATAAACCCTTCCACGGTGTGGGCAACCGGGAAGTGATAACTGCCCTCA
TACTCTAACAGCACTCAAGACTGAACAATGGAGTGTAGGATGTGAATTNTGATTTGCATG
GAACATATTAGTTTCATTTACCGGCTGAATCCCAATGTTGATGTTCAAATAT

consensusID : consensus_4405#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 356
fasta sequence

                              [TTTTATTAGAGCTGTACACCCGTGTTTATAGTTATTTTTACATGAAGTGGTCTATAAAAATAGCGATAGATTGCGTGATTAATTAAGGTACTAAAAGTCAATCAAAATTTAATGTTACTTAAGAGTCCGTGGGTCATAAGAAATGAGATTTGGAAAATTATCCTAGTGATGATTAAAAAGAAAGTAAAATTAGGAACAAAAGTATGCCAAAATAGGATCTATGACAGAGATATGAAAGATAACTGTCCACTTGAGATGGTTAGGCCACGTGTTACGTATGCCTGAACACCGATTACCACGACGCGCTATGCTGACTAGTGTAGGGGATGGTTGGAAAANAAGGGCGGNCNNTNNTN]

[+] EMBL CD185595             [TTTTATTAGAGCTGTACACCCGTGTTTATAGTTATTTTTACATGAAGTGGTCTATAAAAATAGCGATAGATTGCGTGATTAATTAAGGTACTAAAAGTCAATCAAAATTTAATGTTACTTAAGAGTCCGTGGGTCATAAGAAATGAGATTTGGAAAATTATCCTAGTGATGATTAAAAAGAAAGTAAAATTAGGAACAAAAGTATGCCAAAATAGGATCTATGACAGAGATATGAAAGATAACTGTCCACTTGAGATGGTTAGGCCACGTGTTACGTATGCCTGAACACCGATTACCACGACGCGCTATGCTGACTAGTGTAGGGGATGGTTGGAAAANAAGGGCGGNCNNTNNTN]




>consensus_4405#1
TTTTATTAGAGCTGTACACCCGTGTTTATAGTTATTTTTACATGAAGTGGTCTATAAAAA
TAGCGATAGATTGCGTGATTAATTAAGGTACTAAAAGTCAATCAAAATTTAATGTTACTT
AAGAGTCCGTGGGTCATAAGAAATGAGATTTGGAAAATTATCCTAGTGATGATTAAAAAG
AAAGTAAAATTAGGAACAAAAGTATGCCAAAATAGGATCTATGACAGAGATATGAAAGAT
AACTGTCCACTTGAGATGGTTAGGCCACGTGTTACGTATGCCTGAACACCGATTACCACG
ACGCGCTATGCTGACTAGTGTAGGGGATGGTTGGAAAANAAGGGCGGNCNNTNNTN

consensusID : consensus_4405#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 253
fasta sequence

                              [GCCTGGCATACAACTAGAAGGGGCCAAAGAAGCATCATCATAAGGAATGGGTCTCTATGGGAACCCTGGACAAGATTGTGAGAAAGGGAGAACAAGAATACAGCACTTAGAAACAGTAAAACACGAGCAGAGAAATTCAAGGCACAAGCAGACTACGCAGACCCGACCGTTGCTGCTACCTTGACGTGGTGGTCGGGCTTGCCTATCATGATGAGCCAATCGAGCTATACTGGCTGGAACAATCGTCCCTCAG]

[+] EMBL CD090693             [GCCTGGCATACAACTAGAAGGGGCCAAAGAAGCATCATCATAAGGAATGGGTCTCTATGGGAACCCTGGACAAGATTGTGAGAAAGGGAGAACAAGAATACAGCACTTAGAAACAGTAAAACACGAGCAGAGAAATTCAAGGCACAAGCAGACTACGCAGACCCGACCGTTGCTGCTACCTTGACGTGGTGGTCGGGCTTGCCTATCATGATGAGCCAATCGAGCTATACTGGCTGGAACAATCGTCCCTCAG]




>consensus_4405#2
GCCTGGCATACAACTAGAAGGGGCCAAAGAAGCATCATCATAAGGAATGGGTCTCTATGG
GAACCCTGGACAAGATTGTGAGAAAGGGAGAACAAGAATACAGCACTTAGAAACAGTAAA
ACACGAGCAGAGAAATTCAAGGCACAAGCAGACTACGCAGACCCGACCGTTGCTGCTACC
TTGACGTGGTGGTCGGGCTTGCCTATCATGATGAGCCAATCGAGCTATACTGGCTGGAAC
AATCGTCCCTCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4405#0      CATGGAGTCCCGACCGTTGTTGCTACCTTGACGTGGTGGTCGGGCTTGCCTATCGTGATG 60
consensus_4405#2      ------------------------------------------------------------
consensus_4405#1      ------------------------------------------------------------
                                                                                  

consensus_4405#0      AACCAGTCGAGCTAAACAGGCTGGAACAATCGTTCCTCAAGGTCCTACCATACCAGTCAG 120
consensus_4405#2      ------------------------------------------------------------
consensus_4405#1      ------------------------------------------------------------
                                                                                  

consensus_4405#0      GCAGGTCAGTTGAAGAGCGGTAAGACTAAAAGCAGCAAACCCAATGTCCGAAGGCGAAGT 180
consensus_4405#2      ------------------------------------------------------------
consensus_4405#1      ------------------------------------------------------------
                                                                                  

consensus_4405#0      CGTTCTGCTGACTGTATAGAGGTGTGACAGCAGTAAGGTTTTCCTTCAGACAACCAGCAT 240
consensus_4405#2      ------------------------------------------------------------
consensus_4405#1      --TTTTATTAGAGCTGTACACCCGTGTTTATAGTTATTTTTACATGAAGTGGTCTATAAA 58
                                                                                  

consensus_4405#0      AACAGTGATGCTGCCTTCCCACAAGGAGGGGTGGGGTTAGAAAAGGTCGACCCTAAAAAT 300
consensus_4405#2      -----------------------------GCCTGGCATACAACTAGAAGGGGCCAAAGAA 31
consensus_4405#1      AATAGCGATA--GATTGC-----GTGATTAATTAAGGTACTAAAAGTCAATC---AAAAT 108
                                                           **  *   *         ** * 

consensus_4405#0      GCACACCTCGCCTTATCCCACAGAC-ATCTGTCTCCGGCGGTAAGGTCCCAACAAGTATG 359
consensus_4405#2      GCA---------TCATCATA-AGGA-ATGGGTCTCTATGGG--AACCCTGGACAAGATTG 78
consensus_4405#1      TTA------ATGTTACTTAAGAGTCCGTGGGTCATAAGAAATGAGATTTGGAAAATTATC 162
                        *         * *    * **    *  ***          *       * **   * 

consensus_4405#0      GAGCTAAGACAAAATTCACCCACAAAAAGGTCGTGTGTGACCGACCCCAAGCAGTTGTCC 419
consensus_4405#2      TGAGAAAGGGAGAA--CAAGAATACAGCACTTAGAAACAGTAAAACACGAGCAG------ 130
consensus_4405#1      CTAGTGATGATTAA---AAAGAAAGTAAAATTAGGAACAAAAGTATGCCAAAAT------ 213
                            *     **   *   * *      *                * *  *       

consensus_4405#0      CTTGGGAACTTCGGTCACGCTGTCAGGTCATTAAGACCACTTCTAACC--CAATTTCCTT 477
consensus_4405#2      ---AGAAATTCAAGGCACA--AGCAGACTACGCAGACC-CGACCGTTG--CTGCTACCTT 182
consensus_4405#1      ---AGGATCTATGACAGAGATATGAAAGATAACTGTCCACTTGAGATGGTTAGGCCACGT 270
                          * *  *              *         * ** *                 * *

consensus_4405#0      TTCAGGTACCTCTAGATAAACCCTTCCACGGTGTGGGCAACCGGGAAGTGATAACTGCCC 537
consensus_4405#2      GACGTGGTGGTCGGGCTTG--CCTATCATGATG-AGCCAATCGAGCTATACTGGCTGGAA 239
consensus_4405#1      GTTACGTATGCCTGAACACCGATTACCACGACGCGCTATGCTGACTAGTGTAGGGGATGG 330
                           *     *           *  ** *  *         *     *           

consensus_4405#0      TCATACTCTAACAGCACTCAAGACTGAACAATGGAGTGTAGGATGTGAATTNTGATTTGC 597
consensus_4405#2      CAATCGTCCCTCAG---------------------------------------------- 253
consensus_4405#1      TTGGAAAANAAGGGCGGNCNNTNNTN---------------------------------- 356
                                   *                                              

consensus_4405#0      ATGGAACATATTAGTTTCATTTACCGGCTGAATCCCAATGTTGATGTTCAAATAT 652
consensus_4405#2      -------------------------------------------------------
consensus_4405#1      -------------------------------------------------------