These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4422#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 669 fasta sequence [TTTTGGAAAATGAATGCAGAGATTTATTATCATTTCCAGTTTAAGTGGAACTTGATAAACATTCTGTGTTCCAAAATAAATGAATTGTGTTCTACATTGGTGACAAAGCGATTGCTGCACACATTATATTCATCTACACATCCTTTCATCGCATAGTCATTGACGTTGCAAACTGAGAAATTGTTATCTAAAGCTATTCGTTTCTCATCTACAACAACGGGACAGTGAAGTCAGAATCATATAATCGATAGAAATCTTTATATATATACCACCAATTTATTTCTGAAGTTCAATATGTAGACAAACACTCCTAAGATCATGTCATGCGTACTGAGTGTCCATTGTTTCAAATTGAATTATTTAGGATATTGCGCGAATGTTATTACCTCCCTGACTATCAGATCTCTGATGGTAAAGTACACGATTTATTGCTTCGATAATAGTAATACAACTTCAGAATCTAGGCAATTGACATTTGTTAGAAGGGATTCATGTCCGTCTCATTTCAATGACGTTCACTTCAATGTATTTATTATCAATTCTTCTGAACAAAGCATTTCAAATAACACAGTTATTATCCACTGAAATCTGTACACAGTGTTACATCAAACAATAACTTGCTCATCGTTTAAATCCTAAATCCTGAGTATCATTATTCTTCTTACTGTA] [+] EMBL CD115165 [TTTTGGAAAATGAATGCAGAGATTTATTATCATTTCCAGTTTAAGTGGAACTTGATAAACATTCTGTGTTCCAAAATAAATGAATTGTGTTCTACATTGGTGACAAAGCGATTGCTGCACACATTATATTCATCTACACATCCTTTCATCGCATAGTCATTGACGTTGCAAACTGAGAAATTGTTATCTAAAGCTATTCGTTTCTCATCTACAACAACGGGACAGTGAAGTCAGAATCATATAATCGATAGAAATCTTTATATATATACCACCAATTTATTTCTGAAGTTCAATATGTAGACAAACACTCCTAAGATCATGTCATGCGTACTGAGTGTCCATTGTTTCAAATTGAATTATTTAGGATATTGCGCGAATGTTATTACCTCCCTGACTATCAGATCTCTGATGGTAAAGTACACGATTTATTGCTT ] [+] EMBL CD116896 [ AAATGAATTGTGTTCTACATTGGTGACAAAGCGATTGCTGCACACATTATATTCATCTACACATCCTTTCATCGCATAGTCATTGACGTTGCAAACTGAGAAATTGTTATCTAAAGCTATTCGTTTCTCATCTACAACAACGGGACAGTGAAGTCAGAATCATATAATCGATAGAAATCTTTATATATATACCACCAATTTATTTCTGAAGTTCAATATGTAGACAAACACTCCTAAGATCATGTCATGCGAACTGAGTGTCCATTGTTTCAAATTGAATTATTTAGGATATTGCGCGAATGTTATTACATCCCTGACTATCAGATCTCTGATGGTAAAGTAGACGATTTATTGTTTCGATAATAGTAATACAACTTCAGAATCTAGGCAATTGACATTTGTTAGAAGGGATTCATGTCCGTCTCATTTCAATGACGTTCACTTCAATGTATTTATTATCAATTCTTCTGAACAAAGCATTTCAAATAACACAGTTATTATCCACTGAAATCTGTACACAGTGTTACATCAAACAATAACTTGCTCATCGTTTAAATCCTAAATCCTGAGTATCATTATTCTTCTTACTGTA] consensusID : consensus_4422#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 460 fasta sequence [GCGCCAATGTTATTACATCCCTGACTATCAGATCCCTGAAGGTAAAGTAAACGACATATTGTTTTGATAATTGTAATACAACTTCAGAATCTAGGCATTTGACATTTGTTAGAAAGGTATTAATGTCCGTCTCATTTCAATGACGTTCACTTCAATGTATTGATTACCAATCCATCTGAAGAAGGCATTTCAGATAACACAGTTAATATCCACTGAAATCTGTTCAAAGTGTTACATCAAACAATAACTTGCTCGTCGTTTAAATTCCTAATCCTGAGTATCAATATTCTTCTTACTGTAGAGGTTACAGCCACAATGACGAGTTTAATACACCCAAATGGGAAGGTGTCGTTCTATTATGATAACATTCCTACGGAAATTGAGGAAAGTAGGTTGCAATCGGAAATCTATGGATTAATACCTTGTGAAGATGCTTTATTCAATATTATATTTTTGGTAC] [-] EMBL CD117337 [GCGCCAATGTTATTACATCCCTGACTATCAGATCCCTGAAGGTAAAGTAAACGACATATTGTTTTGATAATTGTAATACAACTTCAGAATCTAGGCATTTGACATTTGTTAGAAAGGTATTAATGTCCGTCTCATTTCAATGACGTTCACTTCAATGTATTGATTACCAATCCATCTGAAGAAGGCATTTCAGATAACACAGTTAATATCCACTGAAATCTGTTCAAAGTGTTACATCAAACAATAACTTGCTCGTCGTTTAAATTCCTAATCCTGAGTATCAATATTCTTCTTACTGTAGAGGTTACAGCCACAATGACGAGTTTAATACACCCAAATGGGAAGGTGTCGTTCTATTATGATAACATTCCTACGGAAATTGAGGAAAGTAGGTTGCAATCGGAAATCTATGGATTAATACCTTGTGAAGATGCTTTATTCAATATTATATTTTTGGTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4422#0 TTTTGGAAAATGAATGCAGAGATTTATTATCATTTCCAGTTTAAGTGGAACTTGATAAAC 60 consensus_4422#1 ------------------------------------------------------------ consensus_4422#0 ATTCTGTGTTCCAAAATAAATGAATTGTGTTCTACATTGGTGACAAAGCGATTGCTGCAC 120 consensus_4422#1 ------------------------------------------------------------ consensus_4422#0 ACATTATATTCATCTACACATCCTTTCATCGCATAGTCATTGACGTTGCAAACTGAGAAA 180 consensus_4422#1 ------------------------------------------------------------ consensus_4422#0 TTGTTATCTAAAGCTATTCGTTTCTCATCTACAACAACGGGACAGTGAAGTCAGAATCAT 240 consensus_4422#1 ------------------------------------------------------------ consensus_4422#0 ATAATCGATAGAAATCTTTATATATATACCACCAATTTATTTCTGAAGTTCAATATGTAG 300 consensus_4422#1 ------------------------------------------------------------ consensus_4422#0 ACAAACACTCCTAAGATCATGTCATGCGTACTGAGTGTCCATTGTTTCAAATTGAATTAT 360 consensus_4422#1 ------------------------------------------------------------ consensus_4422#0 TTAGGATATTGCGCGAATGTTATTACCTCCCTGACTATCAGATCTCTGATGGTAAAGTAC 420 consensus_4422#1 ----------GCGCCAATGTTATTACATCCCTGACTATCAGATCCCTGAAGGTAAAGTAA 50 **** *********** ***************** **** ********* consensus_4422#0 ACGATTTATTGCTTCGATAATAGTAATACAACTTCAGAATCTAGGCAATTGACATTTGTT 480 consensus_4422#1 ACGACATATTGTTTTGATAATTGTAATACAACTTCAGAATCTAGGCATTTGACATTTGTT 110 **** ***** ** ****** ************************* ************ consensus_4422#0 AGAAGGG-ATTCATGTCCGTCTCATTTCAATGACGTTCACTTCAATGTATTTATTATCAA 539 consensus_4422#1 AGAAAGGTATTAATGTCCGTCTCATTTCAATGACGTTCACTTCAATGTATTGATTACCAA 170 **** ** *** *************************************** **** *** consensus_4422#0 TTCTTCTGAACAAAGCATTTCAAATAACACAGTTATTATCCACTGAAATCTGTACACAGT 599 consensus_4422#1 TCCATCTGAAGAAGGCATTTCAGATAACACAGTTAATATCCACTGAAATCTGTTCAAAGT 230 * * ****** ** ******** ************ ***************** ** *** consensus_4422#0 GTTACATCAAACAATAACTTGCTCATCGTTTAAATCCTAAATCCTGAGTATCATTATTCT 659 consensus_4422#1 GTTACATCAAACAATAACTTGCTCGTCGTTTAAATTCCTAATCCTGAGTATCAATATTCT 290 ************************ ********** * ************** ****** consensus_4422#0 TCTTACTGTA-------------------------------------------------- 669 consensus_4422#1 TCTTACTGTAGAGGTTACAGCCACAATGACGAGTTTAATACACCCAAATGGGAAGGTGTC 350 ********** consensus_4422#0 ------------------------------------------------------------ consensus_4422#1 GTTCTATTATGATAACATTCCTACGGAAATTGAGGAAAGTAGGTTGCAATCGGAAATCTA 410 consensus_4422#0 -------------------------------------------------- consensus_4422#1 TGGATTAATACCTTGTGAAGATGCTTTATTCAATATTATATTTTTGGTAC 460 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||