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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4430#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 696 fasta sequence
[CCAAACCAAAACATGGCATCAGTGCTTGAAGTCACTAACTTCTAGTCTGAGCCATGTGGGCAAATGCAGACTACCTGGTTGGGGTCCGCGTGACTATCGTAACCAATGGTTGGAGACTCTGTGTGACATGGCTCAGAATCGATCACAATGGCGTAGGTGTATACACTCTTTATCTTCCCTTAAACCTTGAGACTAAAATTGCTTCATATCTCCCTTCCTATACTATATCCTTATATACAACCTATAATTTATATACTACTACCAACACTAAATTAACTACTATTAATCCGGTGTTGATCTTGTTGTGCTAACGAGGTATGGCAACTTGGACCGATGCATATATGTGCCTGGTCCTACGTTGTAGCTGACTGACTGACTGATGTCTCTTTGTGTTTAAGTTTTTATTGAATTTTTTCGACTTTGGTTTTGGTTGACCGTTGTTTTGAGTTCTATATGTTCTTCAACTGTGGGAATACCGCCCTTGCCTTCACATCCGCATCAGGTCCTCATGTTCATCGACGATGATACCCAGATTTGTGAATGTTTCCACATCTTCCAAAATTTCCCC-AATGTGACTNGTGGTGTCCTCTGTGTTGTATTTGAGGATCTTGGGTTTT-CCTTGTGTATGTTAAGGCCTACCGATGCACAGGCTGCTACTACACTGACTGTCTTCACCAGTATTTGTCGGTTTGTATG]
[+] EMBL CD194907 [CCAAACCAAAACATGGCATCAGTGCTTGAAGTCACTAACTTCTAGTCTGAGCCATGTGGGCAAATGCAGACTACCTGGTTGGGGTCCGCGTGACTATCGTAACCAATGGTTGGAGACTCTGTGTGACATGGCTCAGAATCGATCACAATGGCGTAGGTGTATACACTCTTTATCTTCCCTTAAACCTTGAGACTAAAATTGCTTCATATCTCCCTTCCTATACTATATCCTTATATACAACCTATAATTTATATACTACTACCAACACTAAATTAACTACTATTAATCCGGTGTTGATCTTGTTGTGCTAACGAGGTATGGCAACTTGGACCGATGCATATATGTGCCTGGTCCTACGTTGTAGCTGACTGACTGACTGATGTCTCTTTGTGTTTAAGTTTTTATTGAATTTTTTCGACTTTGGTTTTGGTTGACCGTTGTTTTGAGTTCTATATGTTCTTCAACTGTGGGAATACCGCCCTTGCCTTCACATCCGCATCAGGTCCTCATGTTCATCGACGATGATACCCAGATTTGTGAATGTTTCCACATCTTCCAAAATTTCCCC AATGTGACTNGTGGTGTCCTCTGTGTTGTATTTGAGGATCTTGGGTTTT CCTTGTGTATGTTAAG ]
[+] EMBL CD086620 [ taTCTTTGTGTTTAAGTTTTTATTGAATTTTTTCGACTTTGGTTTTGGTTGACCGTTGTTTTGAGTTCTATATGTTCTTCAACTGTGGGAATACCGCCCTTGCCTTCACATCCGCATGAGGTCCTCATGTTCATCGACGATGATACCCAGATTTGTGAATGTTTCCACATCTTCCATAATTTCCCCAAATGTGACTGTTGGTGTCCTCTGTGTTGTATTTGAGGATCTTGGTTTTTCCCTTGTGTATGTTAAAGCCTACCGATGCACAGGCTGCTACTACACTGACTGTCTTCACCAGTATTTGTCGGTTTGTATG]
consensusID : consensus_4430#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 517 fasta sequence
[AATGTCTACGTATTCCCTTCTATGTCGTGACTGTAAAAACTCCTGCCGATGTAGTGTTATTTGGATTAATTCTTATTCATAACTTTCTGTGTAAGGTGTTTTTCTACTTCAATGCTACTCTTAATATACTGATCATGTATTCCAATTGCAAAACTATCCACATATTAAAATAATTTGTATCATACATATTAAGCTAAACACCTCAGTGAATTCATCGAAAAAGTTCTCAATGTCGCTTCTCACAGAAAATGGATAGTAAGTAAGTTTATGTAATATGATACTAACAAATTATTTGCATACAATATAGTTAGGGGCGGCCAAACCAAAACGTGGCATCAGAGCTTGAAGTCACTAACTTCTAGTCTGAGCCATGTTGGTAGATGCAGACTACTTGGTTGGGGTCCGCGTGACTATCGTAACCAATGGCTGGAGACTCTAGGCGACATGGCTCAGAATCAATCACAATGGCGCAGGTGAATACACTCTTTATCTTCTCTTANACCTTGAGATAAAATTG]
[+] EMBL CD145176 [AATGTCTACGTATTCCCTTCTATGTCGTGACTGTAAAAACTCCTGCCGATGTAGTGTTATTTGGATTAATTCTTATTCATAACTTTCTGTGTAAGGTGTTTTTCTACTTCAATGCTACTCTTAATATACTGATCATGTATTCCAATTGCAAAACTATCCACATATTAAAATAATTTGTATCATACATATTAAGCTAAACACCTCAGTGAATTCATCGAAAAAGTTCTCAATGTCGCTTCTCACAGAAAATGGATAGTAAGTAAGTTTATGTAATATGATACTAACAAATTATTTGCATACAATATAGTTAGGGGCGGCCAAACCAAAACGTGGCATCAGAGCTTGAAGTCACTAACTTCTAGTCTGAGCCATGTTGGTAGATGCAGACTACTTGGTTGGGGTCCGCGTGACTATCGTAACCAATGGCTGGAGACTCTAGGCGACATGGCTCAGAATCAATCACAATGGCGCAGGTGAATACACTCTTTATCTTCTCTTANACCTTGAGATAAAATTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4430#0 CCAAACCAAAACATGGCATCAGTGCTTGAAGTCACTAACTTCTAGTCTGAGCCATGTGGG 60
consensus_4430#1 ------------------------------------------------------------
consensus_4430#0 CAAATGCAGACTACCTGGTTGGGGTCCGCGTGACTATCGTAACCAATGGTTGGAGACTCT 120
consensus_4430#1 ------------------------------------------------------------
consensus_4430#0 GTGTGACATGGCTCAGAATCGATCACAATGGCGTAGGTGTATACACTCTTTATCTTCCCT 180
consensus_4430#1 ------AATGTCTACGTATTCCCTTCTATGTCGTGACTGTAAAAACTCCTGCCGATGTAG 54
*** ** * ** * *** *** **** * **** * *
consensus_4430#0 TAAACCTTGAGACTAAAATTGCTTCATATCTCCCTTCCTATACTATATCCTTATATACAA 240
consensus_4430#1 TGTTATTTG-GATTAATTCTTATTCATAACTTTCTGTGTAAGGTGTTTTTCTACTTCAAT 113
* *** ** *** * ****** ** ** ** * * * ** * *
consensus_4430#0 CCTATAATTTATATACT-ACTACCAACACTAAATTAACTACTATTAATCCGGTGTTGATC 299
consensus_4430#1 GCTACTCTTAATATACTGATCATGTATTCCAATTGCAAAACTATCCAC---ATATTAAAA 170
*** ** ******* * * * * ** * * ***** * * ** *
consensus_4430#0 TTGTT-GTGCTAACGAGGTATGGCAACTTGGACCGATGCATATATGTGCCTGGTCCTACG 358
consensus_4430#1 TAATTTGTATCATACATATTAAGCTAAACACCTCAGTGAATTCATCGAAAAAGTTCT-CA 229
* ** ** * * * ** * * ** ** ** ** ** *
consensus_4430#0 TTGTAGCTGACTGACTGACTGATGTCTCTTTGTGTTTAAGTTTTTATTGAATTTTTTCGA 418
consensus_4430#1 ATGTCGCTT-----CTCACAGAAAATGGATAGTAAGTAAGTTTATGT------------A 272
*** *** ** ** ** * ** ******* * * *
consensus_4430#0 CTTTGGTTTTGGTTGACCGTTGTTTTGAGTTCTATATGTTCTTCAACTGTGGGAATACCG 478
consensus_4430#1 ATATGAT----ACTAACAAATTATTTGCATACAATAT-------AGTTAGGGG-----CG 316
* ** * * ** * **** * * **** * * *** **
consensus_4430#0 CCCTTGCCTTCACATCCGCATCAGGTCCTCATGTTCATCGACGATGATACCCAGATTTGT 538
consensus_4430#1 GCCAAACCAAAACGTG-GCATCAGAGCTTGAAGT-CACTAACTTCTAGTCTGAGCCATGT 374
** ** ** * ******* * * * ** ** ** * * ** ***
consensus_4430#0 GAATGTTTCCACATCTTCCAAAATTTCCCCAATGTGACTNGTGGTGTCCTCTGTGTTGTA 598
consensus_4430#1 TGGTAGATGCAGA-CTACTTGGTTGGGGTCCGCGTGACTA-TCGTAACCAATG------- 425
* * ** * ** * * * ****** * ** ** **
consensus_4430#0 TTTGAGGATCTTGGGTTTTCCTTGTGTATGTTAAGGCCTACCGATGCACAGGCTGCTACT 658
consensus_4430#1 GCTGGAGACTCTAGGCGA-CATGGCTCAGAATCAATCACAATGGCGCAG-----GTGAAT 479
** ** * ** * * * * * * * * * *** * * *
consensus_4430#0 ACACTGACTGTCTTCACCAGTATTTGTCGGTTTGTATG 696
consensus_4430#1 ACACTCTTTATCTTCTCTTANACCTTGAGATAAAATTG 517
***** * ***** * * * * * **
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||