These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4466#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 537 fasta sequence [GATTAGTAGCAGTGCAATGTTGAGAAGAAATATCAAATGACAAATCTTTAATATCCATAACATTTGATAATTCCGATATGAAGCGTATGACTTTATTTGGTGACCAAAATAGTGGATAGTAAGTGATCTCTTCAGCTGTTGGTCGATCTTTAGGATCAGATGAAAGCATTGTTTGTATAAGGTAACAGGCTAAATAGCTTTCATGAACATTGATTGGATTCTCTGTCAAAATGTCCAAATTATGTATACGACGTTCAGCTATTGCCAACTGTCGATCATGTTGACGGCTTACAGTGGTACATCTGAATGATTTAAGTTCATTTACGGAGTCAGAGTTGTTGCCCACACTACCACCACCACCAGTAGTAAAAGATGACGAGGATGACACTGACGAACATATACTTGTTGATTGGGTATTTTTTTTCGATTTGAAATTTATTCAATTCTTTACTACAGCAATCATATGGATGTTTACCATAAGTTAAAACATAATAAGCCAAGAGACCACAAGCGAATATATCAATTGCACCAGTCACT] [+] EMBL CD194914 [GATTAGTAGCAGTGCAATGTTGAGAAGAAATATCAAATGACAAATCTTTAATATCCATAACATTTGATAATTCCGATATGAAGCGTATGACTTTATTTGGTGACCAAAATAGTGGATAGTAAGTGATCTCTTCAGCTGTTGGTCGATCTTTAGGATCAGATGAAAGCATTGTTTGTATAAGGTAACAGGCTAAATAGCTTTCATGAACATTGATTGGATTCTCTGTCAAAATGTCCAAATTATGTATACGACGTTCAGCTATTGCCAACTGTCGATCATGTTGACGGCTTACAGTGGTACATCTGAATGATTTAAGTTCATTTACGGAGTCAGAGTTGTTGCCCACACTACCACCACCACCAGTAGTAAAAGATGACGAGGATGACACTGACGAACATATACTTGTTGATTGGGTATTTTTTTTCGATTTGAAATTTATTCAATTCTTTACTACAGCAATCATATGGATGTTTACCATAAGTTAAAACATAATAAGCCAAGAGACCACAAGCGAATATATCAATTGCACCAGTCACT] [-] EMBL CD194524 [ AAGAAATATCAAATGACAAATCTTTAATATCCATAACATTTGATAATTCCGATATGAAGCGTATGACTTTATTTGGTGACCAAAATAGTGGATAGTAAGTGATCTCTTCAGCTGTTGGTCGATCTTTAGGATCAGATGAAAGCATTGTTTGTATAAGGTAACGGGCTAAATAGCTTTCATGAACATTGATTGGATTCTCTGTCAAAATGTCCAAATTAGGTAGACGACGTTCAGCTATTGCCAACTGTCGTTCATGTTGACGGCTTAAAGTGGTACATCTGAATGATTTAAGTTCATTTACGGAGTCAGAGTTGTTGCCCACACTACCACCACCACCAGTAGTAAAAGATGACGAGGATGACACTG ] consensusID : consensus_4466#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 379 fasta sequence [AATAAGGAACTTATTCCAATTATCAATCCAAATACCGTAGATATGCATTTTAACAATAAAAGTGATACATTAGATGTATCCTCGGTGACAAGTATTCAAACTGATTCATCATCTATCAGTAGACCAGATGATTCATTGGAGTCTACTAACCGACGAAGGCGTGATGCTTTCGGGAGAGTTGTTGCCCACACTACCACCACCACCAGTAGTAAAAGATGACGAGGATGACACTGACGAACATATACTTGTTGATTGGGTATTTTTTTCGATTTGAAATTTATTCAATTCTTTACTACAGCAATCATATGGATGTTTACCATAAGTTAAAACATAATAAGCCAAGAGACCACAAGCGAATATATCAATTGCACAAGTCACT] [+] EMBL CD195248 [AATAAGGAACTTATTCCAATTATCAATCCAAATACCGTAGATATGCATTTTAACAATAAAAGTGATACATTAGATGTATCCTCGGTGACAAGTATTCAAACTGATTCATCATCTATCAGTAGACCAGATGATTCATTGGAGTCTACTAACCGACGAAGGCGTGATGCTTTCGGGAGAGTTGTTGCCCACACTACCACCACCACCAGTAGTAAAAGATGACGAGGATGACACTGACGAACATATACTTGTTGATTGGGTATTTTTTTCGATTTGAAATTTATTCAATTCTTTACTACAGCAATCATATGGATGTTTACCATAAGTTAAAACATAATAAGCCAAGAGACCACAAGCGAATATATCAATTGCACAAGTCACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4466#0 GATTAGTAGCAGTGCAATGTTGAGAAGAAATATCAAATGACAAATCTTTAATATCCATAA 60 consensus_4466#1 ------------------------------------------------------------ consensus_4466#0 CATTTGATAATTCCGATATGAAGCGTATGACTTTATTTGGTGACCAAAATAGTGGATAGT 120 consensus_4466#1 ------------------------------------------------------------ consensus_4466#0 AAGTGATCTCTTCAGCTGTTGGTCGATCTTTAGGATCAGATGAAAGCATTGTTTGTATAA 180 consensus_4466#1 -------------AATAAGGAACTTATTCCAATTATCA-ATCCAAATACCGTAGATATGC 46 * ** * **** ** ** * ** *** consensus_4466#0 GGTAACAGGCTAAATAGCTTTCATGAACATTGATTGGATTCTCTGTCA-AAATGTCCAAA 239 consensus_4466#1 ATTTTAACAATAAAAG----TGAT--ACATTAGATGTATCCTCGGTGACAAGTATTCAAA 100 * * **** * ** ***** ** ** *** ** * ** * * **** consensus_4466#0 TTATGTATACGACGTTCAGCTATTGCCAACTGTCGATCATGTTGACGGCTTACAGTGGTA 299 consensus_4466#1 CTG----------ATTCATCATCTATCA---GTAGACCA----GATGATTCATTGGAGTC 143 * **** * * ** ** ** ** ** * * * * ** consensus_4466#0 CATCTGAATGATTTAAGTTCATTTACGGAGTCAGAGTTGTTGCCCACACTACCACCACCA 359 consensus_4466#1 TA-CTAACCGACGAAGGCGTGATGCTTTCGGGAGAGTTGTTGCCCACACTACCACCACCA 202 * ** * ** * * * * **************************** consensus_4466#0 CCAGTAGTAAAAGATGACGAGGATGACACTGACGAACATATACTTGTTGATTGGGTATTT 419 consensus_4466#1 CCAGTAGTAAAAGATGACGAGGATGACACTGACGAACATATACTTGTTGATTGGGTATTT 262 ************************************************************ consensus_4466#0 TTTTTCGATTTGAAATTTATTCAATTCTTTACTACAGCAATCATATGGATGTTTACCATA 479 consensus_4466#1 TTTT-CGATTTGAAATTTATTCAATTCTTTACTACAGCAATCATATGGATGTTTACCATA 321 **** ******************************************************* consensus_4466#0 AGTTAAAACATAATAAGCCAAGAGACCACAAGCGAATATATCAATTGCACCAGTCACT 537 consensus_4466#1 AGTTAAAACATAATAAGCCAAGAGACCACAAGCGAATATATCAATTGCACAAGTCACT 379 ************************************************** ******* |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||