cluster # 4476

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Schistosoma mansoni
cluster # 4476 cluster # 4476 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4476#0 length = 112 sequences # 2

consensus_4476#1 length = 106 sequences # 1

consensusID : consensus_4476#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 112
fasta sequence

                              [CGGTACCCCGNATGTCGC-AATAGGTAGGTGAGTGAAACATTGGTGAATATTATTGGGTGAAGAACCTCTGCGGTTACCGTCACCACAATAATTGGGTGAAATACCACATTTT]

[+] EMBL CD127078             [CGGTACCCCGNATGTCGC AATAGGTAGGTGAGTGAAACATTGGTGAATATTATTGGGTGAAGAACCTCTGCGGTTACCGTCACCACAATAATTGGGTGAAATACCACATTTT]
[+] EMBL CD127541             [    ccaCCGNATGT GCAAATA GTAGGTGAGTGAAACATTGG GAATATTATTGGGTGAAGAACCTCTGCGGTTACCGTCACCACAATAATTGGGTGAAATACCACATTTT]




>consensus_4476#0
CGGTACCCCGNATGTCGCAATAGGTAGGTGAGTGAAACATTGGTGAATATTATTGGGTGA
AGAACCTCTGCGGTTACCGTCACCACAATAATTGGGTGAAATACCACATTTT

consensusID : consensus_4476#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 106
fasta sequence

                              [ACCAGAGGAAGGTGGAGTGAAACATTGGGAATATTATTGGTGAAGAACTCTGCGGTTACCTGTCACACAATAATTGGGTGAAATACCACATTTTTCATCCAATACA]

[+] EMBL CD126660             [ACCAGAGGAAGGTGGAGTGAAACATTGGGAATATTATTGGTGAAGAACTCTGCGGTTACCTGTCACACAATAATTGGGTGAAATACCACATTTTTCATCCAATACA]




>consensus_4476#1
ACCAGAGGAAGGTGGAGTGAAACATTGGGAATATTATTGGTGAAGAACTCTGCGGTTACC
TGTCACACAATAATTGGGTGAAATACCACATTTTTCATCCAATACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4476#0      CGGTACCCCGNATGTCGCAATAGGTAGGTG-AGTGAAACATTGGTGAATATTATTGGGTG 59
consensus_4476#1      ----------------ACCAGAGGAAGGTGGAGTGAAACATTGG-GAATATTATTGG-TG 42
                                       * * *** ***** ************* ************ **

consensus_4476#0      AAGAACCTCTGCGGTTACCGTCACCACAATAATTGGGTGAAATACCACATTTT------- 112
consensus_4476#1      AAGAAC-TCTGCGGTTACCTGTCACACAATAATTGGGTGAAATACCACATTTTTCATCCA 101
                      ****** ************     *****************************       

consensus_4476#0      -----
consensus_4476#1      ATACA 106