These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4488#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 858 fasta sequence [TTAGTCAATAACTCTCCTAATTTTCCTTTTATTCATAAAGCCAGTACTGGTAACGGGAATAACGGTAATAGTAGTTGTCATGCTACTACTACTACTACTACTACTTCTACAACCGTACATGCTCAAGTTTATTTAATTGA-TTTTGCCCATTGGTCTGAAAAACAT-TATTCTCCCTTATTTAATAATGATATTGAACATAATAAAAATTATTGGACATGTGAATTAACTAATGGTTTTCGGCATGGATTAGAAAATTTAATCAAATTAATGCATTATATTGTGAATAATGAAAGTGCAATTTGTATAAATTCATAAACGGTTATTTAACTTTTTCTTATGTATCAATATATATATATTACTAATTACATAACTAGTCTTAGTTAATTACTATATCAGTTTAGTTGATCTTCTTTTCAACATTTTTTTTATTGAAAGTAATCACATACTACTGATATATGTACACAGAAATAATCTCTCATTGATGAAGAGTTGAACACTGTCGCTCATTAGTCAGTTACACCGTAGAAGTTCGTACGTACGTACGTACGTACATCAGTTCGAGTTGCTATAGCACATATCTAAACACACACACACAAACACTTTTTTTGAAATCCACTATTGTTATTTTTTTTTCTGCGACGATCAATCATATTATTGGTATTGGTATTATTACTTATATGATATTGTATGCATATTACAAGAGAAAAGGGGGGTTTCTGCATTTTGACAAATTTGATTTATTCCTCACTTACTCTTATCTATCTCTCTGGGGTTTTTGCCTTCTCCTCTCTCAATCTATCGAATGACTCACTATGATTCAGATGTATTTATTTGTGACCCCCCCTCCTTTATATTATA] [+] EMBL CD080175 [TTAGTCAATAACTCTCCTAATTTTCCTTTTATTCATAAAGCCAGTACTGGTAACGGGAATAACGGTAATAGTAGTTGTCATGCTACTACTACTACTACTACTACTTCTACAACCGTACATGCTCAAGTTTATTTAATTGA TTTTGCCCATTGGTCTGAAAAACAT TATTCTCCCTTATTTAATAATGATATTGAACATAATAAAAATTATTGGACATGTGAATTAACTAATGGTTTTCGGCATGGATTAGAAAATTTAATCAAATTAATGCATTATATTGTGAATAATGAAAGTGCAATTTGTATAAATTCATAAACGGTTATTTAACTTTTTCTTATGTATCAATATATATATATTACTAATTACATAACTAGTCTTAGTTAATTACTATATCAGTTTAGTTGATCTTCTTTTCAACATTTTTTTTATTGAAAGTAATCACATACTACTGATATATGTACACAGAAATAATCTCTCATTGATGAAGAGTTGAACACTGTCGCTCATTAGTCAGTTACACCGTAGAAGTTCGTACGTACGTACGTACGTACATCAGTTCGAGTTGCTATAGCACATATCTAAACACACACACACAAACACTTTTTTTGAAATCCACTATTGTTATTTTTTTTTCTGCGACGATCAATCATATTATTGGTATTGGTATTATTACTTATATGATATTGTATGCATATTACAAGAGAAAAGGGGGGTTTCTGCATTTTGACAAATTTGATTTATTCCTCACTTACTCTTATCTATCTCTCTGGGGTTTTTGCCTTCTCCTCTCTCAATCTATCGAATGACTCACTATGATTCAGATGTATTTATTTGTGACCCCCCCTCCTTTATATTATA] [-] EMBL CD114153 [ GGTAATAGTAGTTGTCATGCTACTACTACTACTACTACTACTTCTACANCCGTACATGCTCAAGTTTATTTAA TGATTTTTGCCCATTGGTCTG AAAACATATTTTCTCCCTTATTTAATAATGATATTGNACATAATAAAAATTATTGGACATGTGAATTAACTAATGGTNTTCGGCATGGATTAGANAATTTAATCAAATTAATGCATTATATTGTGAATAATGAAAGTGCAATTTGTATAAATTCATAAACGGTTATTTAACTTTTTCTTATGTATCAATATATATATATTACTAATTACATAACTAGTCTTAGTTAATTACTATATCAGTTTAGTTGATCTTCTTTTCAACATTTTTTTTATTGAAAGTAATCACATACTACTGATATATGTACACAGAAATAATCTCTCATTGATGAAGAGTTGAACACTGTCGCTCATTAGTCAGTTACAACGTAGAAGTTCGTACGTACGTACGTACGTACATCAGTTCGAGTTGCTATAGCACATATCTAAACACACACACACAAACACTTTTTTTGAAATCCACTATTGTTATTTTTTTTTCTGCGACGATCAATCATATTATTGTTATTGTTATTATTACTTATATGATATTGTATGCATATTACAAGAGAAAAGGGGGGTTTCTGCATTTTGACAATTTTGATTTATTCCTCACTTA ] consensusID : consensus_4488#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 393 fasta sequence [ACATCATACTTCATGTACAACAAGAAATCCAACATTGAATAATCAATTAGTCAATAACTCTCCTAATTTTCCTTTTATTCATAAAGCCAGTACTGGTAACGGGAATAACGGTAATAGTAGTTGTCATGCTACTACTACTACTACTACTTCTACAACCGTACATGCTCAAGTTTATTTAATTGATTTTGCCCATTGGTCTGAAAACATTATTCTCCCTTATTTAATAATGATATTGAACATTATAAAATTATTGGACATGGGAATTAACTAATGGTTTTCGGCGATGGATTAAGAATTTTATCCAAATTATGGCATTATATTGTGAAAATGAAGGTGCTATTTGTATAATTCTAACGGTTATTTACTTTTCCTAGGCACAATATATATATTCAC] [+] EMBL AW061388 [ACATCATACTTCATGTACAACAAGAAATCCAACATTGAATAATCAATTAGTCAATAACTCTCCTAATTTTCCTTTTATTCATAAAGCCAGTACTGGTAACGGGAATAACGGTAATAGTAGTTGTCATGCTACTACTACTACTACTACTTCTACAACCGTACATGCTCAAGTTTATTTAATTGATTTTGCCCATTGGTCTGAAAACATTATTCTCCCTTATTTAATAATGATATTGAACATTATAAAATTATTGGACATGGGAATTAACTAATGGTTTTCGGCGATGGATTAAGAATTTTATCCAAATTATGGCATTATATTGTGAAAATGAAGGTGCTATTTGTATAATTCTAACGGTTATTTACTTTTCCTAGGCACAATATATATATTCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4488#0 ----------------------------------------------TTAGTCAATAACTC 14 consensus_4488#1 ACATCATACTTCATGTACAACAAGAAATCCAACATTGAATAATCAATTAGTCAATAACTC 60 ************** consensus_4488#0 TCCTAATTTTCCTTTTATTCATAAAGCCAGTACTGGTAACGGGAATAACGGTAATAGTAG 74 consensus_4488#1 TCCTAATTTTCCTTTTATTCATAAAGCCAGTACTGGTAACGGGAATAACGGTAATAGTAG 120 ************************************************************ consensus_4488#0 TTGTCATGCTACTACTACTACTACTACTACTTCTACAACCGTACATGCTCAAGTTTATTT 134 consensus_4488#1 TTGTCATGCTACTACTACTACTACTA---CTTCTACAACCGTACATGCTCAAGTTTATTT 177 ************************** ******************************* consensus_4488#0 AATTGATTTTGCCCATTGGTCTGAAAAACATTATTCTCCCTTATTTAATAATGATATTGA 194 consensus_4488#1 AATTGATTTTGCCCATTGGTCTGAAAA-CATTATTCTCCCTTATTTAATAATGATATTGA 236 *************************** ******************************** consensus_4488#0 ACATAATAAAAATTATTGGACATGTGAATTAACTAATGGTTTTCGGC-ATGGATTAGAAA 253 consensus_4488#1 ACATTATAAAA-TTATTGGACATGGGAATTAACTAATGGTTTTCGGCGATGGATTAAGAA 295 **** ****** ************ ********************** ******** ** consensus_4488#0 ATTTAATCAAATTAATGCATTATATTGTGAATAATGAAAGTGCAATTTGTATAAATTCAT 313 consensus_4488#1 TTTTATCCAAATTATGGCATTATATTGTGAA-AATGAAGGTGCTATTTGTATAATTCT-- 352 **** ******* *************** ****** **** ********** * consensus_4488#0 AAACGGTTATTTAACTTTTTCTTATGTATCAATATATATATATTACTAATTACATAACTA 373 consensus_4488#1 -AACGGTTATTTA--CTTTTCCTAGGCA-CAATATATATAT-TCAC-------------- 393 ************ ***** ** * * ************ * ** consensus_4488#0 GTCTTAGTTAATTACTATATCAGTTTAGTTGATCTTCTTTTCAACATTTTTTTTATTGAA 433 consensus_4488#1 ------------------------------------------------------------ consensus_4488#0 AGTAATCACATACTACTGATATATGTACACAGAAATAATCTCTCATTGATGAAGAGTTGA 493 consensus_4488#1 ------------------------------------------------------------ consensus_4488#0 ACACTGTCGCTCATTAGTCAGTTACACCGTAGAAGTTCGTACGTACGTACGTACGTACAT 553 consensus_4488#1 ------------------------------------------------------------ consensus_4488#0 CAGTTCGAGTTGCTATAGCACATATCTAAACACACACACACAAACACTTTTTTTGAAATC 613 consensus_4488#1 ------------------------------------------------------------ consensus_4488#0 CACTATTGTTATTTTTTTTTCTGCGACGATCAATCATATTATTGGTATTGGTATTATTAC 673 consensus_4488#1 ------------------------------------------------------------ consensus_4488#0 TTATATGATATTGTATGCATATTACAAGAGAAAAGGGGGGTTTCTGCATTTTGACAAATT 733 consensus_4488#1 ------------------------------------------------------------ consensus_4488#0 TGATTTATTCCTCACTTACTCTTATCTATCTCTCTGGGGTTTTTGCCTTCTCCTCTCTCA 793 consensus_4488#1 ------------------------------------------------------------ consensus_4488#0 ATCTATCGAATGACTCACTATGATTCAGATGTATTTATTTGTGACCCCCCCTCCTTTATA 853 consensus_4488#1 ------------------------------------------------------------ consensus_4488#0 TTATA 858 consensus_4488#1 ----- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||