cluster # 4545

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Schistosoma mansoni
cluster # 4545 cluster # 4545 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4545#0 length = 478 sequences # 2

consensus_4545#1 length = 221 sequences # 1

consensusID : consensus_4545#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 478
fasta sequence

                              [AAGAAATCCACCTGTTTCAGTTTGAGCACCCGGGTAGTATCACAGCCCTCACACAAATGAAATGAGATTTGTGTGGCGCATATATATCTGGTGCCCTTTTGTACCAATATTTATGTGTTCAAATAAATAAAAAATAAAAAACAAAAACCCTAACCGTTATTCGTAACTGTAACCTAAGTCCGAATACTTAAACCTAATCTTTCTCCGTTTACTAAAATAATGTAATGTGTAAAGGTTCATTAATGATATCAAAGTTATCTATCCACTATAATTTTACTGCTTTTGTAGTTAATTCTCATATAGTGTTTTCTGGTTTGCTAATAATTAGCTCAAAGTTGATAAAATAGTATATTTTTACCGAAACCGCTAACACGGAGTCATACACATAGAAAAAGAACAATTTGAGACATGACCGAATAAAAGTCCTGGTTTTGGTAAGTGATGAGAATGATAACCGATGAACTTTGTTAAAAAGGAT]

[+] EMBL CD091614             [AAGAAATCCACCTGTTTCAGTTTGAGCACCCGGGTAGTATCACAGCCCTCACACAAATGAAATGAGATTTGTGTGGCGCATATATATCTGGTGCCCTTTTGTACCAATATTTATGTGTTCAAATAAATAAAAAATAAAAAACAAAAACCCTAACCGTTATTCGTAACTGTAACCTAAGTCCGAATACTTAAACCTAATCTTTCTCCGTTTACTAAAATAATGTAATGTGTAAAGGTTCATTAATGATATCAAAGTTATCTATCCACTATAATTTTACTGCTTTTGTAGTTAATTCTCATATAGTGTTTTCTGGTTTGCTAATAATTAGCTCAAAGTTGATAAAATAGTATATTTTTACCGAAACCGCTAACACGGAGTCATACACATAGAAAAAGAACAATTTGAGACATGACCGAATAAAAGTCCTGGTTTTGGTAAGTGATGAGAATGATAACCGATGAACTTTGTTAAAAAGGAT]
[+] EMBL CD091658             [AAGAAATCCACCTGTTTCAGTTTGAGCACCCGGGTAGCATCACAGCCCTCACACAAATGAAATGAGATTTGTGTGGCGCATATATATCTGGTGCCCTTTTGTACCAATATTTATGTGTTCAAATAAATAAAAAATAAAAAACAAAAACCCTAACCGTTATTCGTAACTGTAACCTAAGTCCGAATACTTAAACTTAATCTTTCTCCGTTTACTAAAATAATGTAATGTGTAAAGGTTCATTAATGATATCAAAGTTATCTATCCACTATAATTTTACTGCTTTTGTAGTTAATTCTCATATAGTGTTTTCTGGTTTGCTAATAATTAGCTCAAAGTTGATAAAATAGTATATTTTTACCGAAACCGTTAACACGGAGTC                                                                                                   ]




>consensus_4545#0
AAGAAATCCACCTGTTTCAGTTTGAGCACCCGGGTAGTATCACAGCCCTCACACAAATGA
AATGAGATTTGTGTGGCGCATATATATCTGGTGCCCTTTTGTACCAATATTTATGTGTTC
AAATAAATAAAAAATAAAAAACAAAAACCCTAACCGTTATTCGTAACTGTAACCTAAGTC
CGAATACTTAAACCTAATCTTTCTCCGTTTACTAAAATAATGTAATGTGTAAAGGTTCAT
TAATGATATCAAAGTTATCTATCCACTATAATTTTACTGCTTTTGTAGTTAATTCTCATA
TAGTGTTTTCTGGTTTGCTAATAATTAGCTCAAAGTTGATAAAATAGTATATTTTTACCG
AAACCGCTAACACGGAGTCATACACATAGAAAAAGAACAATTTGAGACATGACCGAATAA
AAGTCCTGGTTTTGGTAAGTGATGAGAATGATAACCGATGAACTTTGTTAAAAAGGAT

consensusID : consensus_4545#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 221
fasta sequence

                              [CATCAGTACTTCTTATTTAGTAAACATACACACAACAAGTGTTCAATAATGTTCATTAAAAGAATCATTGTTGACTTATTTTGGAGGAGCATCTCCACCACCAAAAGTGGCGGACCAACCTTGTAGAGGCCATTTTATGTACCTGTTAGAATTCAGGTAGTTCTTGATTGGTGGTAAATTTTCTATACGTTGTTTTTAGCTAATTAGTTTTGGAAAATTAT]

[+] EMBL AA999498             [CATCAGTACTTCTTATTTAGTAAACATACACACAACAAGTGTTCAATAATGTTCATTAAAAGAATCATTGTTGACTTATTTTGGAGGAGCATCTCCACCACCAAAAGTGGCGGACCAACCTTGTAGAGGCCATTTTATGTACCTGTTAGAATTCAGGTAGTTCTTGATTGGTGGTAAATTTTCTATACGTTGTTTTTAGCTAATTAGTTTTGGAAAATTAT]




>consensus_4545#1
CATCAGTACTTCTTATTTAGTAAACATACACACAACAAGTGTTCAATAATGTTCATTAAA
AGAATCATTGTTGACTTATTTTGGAGGAGCATCTCCACCACCAAAAGTGGCGGACCAACC
TTGTAGAGGCCATTTTATGTACCTGTTAGAATTCAGGTAGTTCTTGATTGGTGGTAAATT
TTCTATACGTTGTTTTTAGCTAATTAGTTTTGGAAAATTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4545#0      AAGAAATCCACCTGTTTCAGTTTGAGCACCCGGGTAGTATCACAGCCCTCACACAAATGA 60
consensus_4545#1      ------------------------------------------------------------
                                                                                  

consensus_4545#0      AATGAGATTTGTGTGGCGCATATATATCTGGTGCCCTTTTGTACCAATATTTATGTGTTC 120
consensus_4545#1      -----------------------------------------CATCAGTACTTCT-TATTT 18
                                                                * ** ** ** * * ** 

consensus_4545#0      AAATAAATAAAAAATAAAAAACAAAAACCCTAACCGTTATTCGTAACTGTAACCTAAGTC 180
consensus_4545#1      AG-TAAACATA---CACACAACAAGTGTTCAA--TAATGTTCATTAAAAGAATCATTGTT 72
                      *  **** * *    * * *****     * *     * *** * *    ** *   ** 

consensus_4545#0      CGAATACTTAAACCTAATCTTTCTCCGTTTACTAAAATAATGTAATGTGTAAAGGTTCAT 240
consensus_4545#1      GACTTATTTTGGAGGAGCATCTCCAC---CACCAAAA----GTGGCGGACCAAC-CTTGT 124
                          ** **      *   * **  *    ** ****    **   *    **   *  *

consensus_4545#0      TAATGATATCAAAGTTATCTATCCACTATAATTTTACTGCTTTTGTAGTTAATTCTCATA 300
consensus_4545#1      AGAGGCCATT----TTATGTACCTGTTAGAATTCAGGTAGTTCT-----TGATTGGTGGT 175
                        * *  **     **** ** *   ** ****    *  ** *     * ***      

consensus_4545#0      TAGTGTTTTCTGGTTTGCTAATAATTAGCTCAAAGTTGATAAAATAGTATATTTTTACCG 360
consensus_4545#1      AAATTTTCTATACGTTGTTTTTAGCTAATT--AGTTTTGGAAAATTAT------------ 221
                       * * ** * *   *** *  **  **  *  *  **   *****  *            

consensus_4545#0      AAACCGCTAACACGGAGTCATACACATAGAAAAAGAACAATTTGAGACATGACCGAATAA 420
consensus_4545#1      ------------------------------------------------------------
                                                                                  

consensus_4545#0      AAGTCCTGGTTTTGGTAAGTGATGAGAATGATAACCGATGAACTTTGTTAAAAAGGAT 478
consensus_4545#1      ----------------------------------------------------------