cluster # 4551

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Schistosoma mansoni
cluster # 4551 cluster # 4551 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4551#0 length = 608 sequences # 2

consensus_4551#1 length = 225 sequences # 1

consensusID : consensus_4551#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 608
fasta sequence

                              [CAAACCAAATGNTGNATCCTGNAATTCCCTGTTCGACCATTAATGTACACTGGTTTAGGCGATGTAATTGGTTCTACTGTATGGTCAAGTGCAGAAGCATCATCATTGGCTGCAANCCCAGGGTCTAAAGTGGAAGATTCAACTAACTTNCCACATCCAGTNGNTGAATCACTNGCAAAATTTGGNAAAGCAGCTGAAAAAGCGAATAGAATGAGAGTTTTAGCTTCTACTCAAGGTTTACATGCACCATTACGTCTATCTATGGAACAACATATAATGCAACGGTATTCAACCACGTCTACCNGGGTTTATATTCTTATCATCCCTTAGCTAGNCANTTAANTGGGAGTNTTAGATGAGATTGATATAGCTGACTTTATAAATCC-CCGCGAAGATTCTGAAACCGTTGGAATGCCCCAATTGATGATGGAGCATAAACTTGGTCTTTTGTAAATGACAATTGGTTTTCTCGAATTGAATGAAACAGTCAGTCTTTCTTGAAACTATTATTACAAAAAGAAATAATAATGAAATACATTGTCCTACCATCTTTGTATTACCAATAATGNTCTCAATATCATTTTGTAAGAANATAAAATGACAAATAT]

[+] EMBL SM850                [CAAACCAAATGNTGNATCCTGNAATTCCCTGTTCGACCATTAATGTACACTGGTTTAGGCGATGTAATTGGTTCTACTGTATGGTCAAGTGCAGAAGCATCATCATTGGCTGCAANCCCAGGGTCTAAAGTGGAAGATTCAACTAACTTNCCACATCCAGTNGNTGAATCACTNGCAAAATTTGGNAAAGCAGCTGAAAAAGCGAATAGAATGAGAGTTTTAGCTTCTACTCAAGGTTTACATGCACCATTACGTCTATCTATGGAACAACATATAATGCAACGGTATTCAACCACGTCTACCNGGGTTTATATTCTTATCATCCCTTAGCTAGNCANTTAANTGGGAGTNTTAGATGAGATTGATATAGCTGACTTTATAAATCC CCGCG                                                                                                                                                                                                                         ]
[+] EMBL CD164176             [                                  GACCATTAATGTACACTGGTTTAGGCGATGTAATTGGTTCTACTGTATGGTCAAGTGCAGAAGCATCATCATTGGCTGCAATCCCAGGGTCTAAAGTGGAAGATTCAACTAACTTTCCACATCCAGTAGCTGAATCACTTGCAAAATTTGGTAAAGCAGCTGAAAAAGCGAATAGAATGAGAGTTTTAGCTTCTACTCAAGGTTTACATGCACCATTACGTCTATCTATGGAACAACATATAATGCAAC GTATTCAACCACGTCTACC TGGTTTATATTCTTATCATCCTTTAGCTAGTCAATTAAATGGGAGT TTAGATGAGATAGATATAGCTGACTTTATAAATCCTGCG GAAGATTCTGAAACCGTTGGAATGCCCCAATTGATGATGGAGCATAAACTTGGTCTTTTGTAAATGACAATTGGTTTTCTCGAATTGAATGAAACAGTCAGTCTTTCTTGAAACTATTATTACAAAAAGAAATAATAATGAAATACATTGTCCTACCATCTTTGTATTACCAATAATGNTCTCAATATCATTTTGTAAGAANATAAAATGACAAATAT]




>consensus_4551#0
CAAACCAAATGNTGNATCCTGNAATTCCCTGTTCGACCATTAATGTACACTGGTTTAGGC
GATGTAATTGGTTCTACTGTATGGTCAAGTGCAGAAGCATCATCATTGGCTGCAANCCCA
GGGTCTAAAGTGGAAGATTCAACTAACTTNCCACATCCAGTNGNTGAATCACTNGCAAAA
TTTGGNAAAGCAGCTGAAAAAGCGAATAGAATGAGAGTTTTAGCTTCTACTCAAGGTTTA
CATGCACCATTACGTCTATCTATGGAACAACATATAATGCAACGGTATTCAACCACGTCT
ACCNGGGTTTATATTCTTATCATCCCTTAGCTAGNCANTTAANTGGGAGTNTTAGATGAG
ATTGATATAGCTGACTTTATAAATCCCCGCGAAGATTCTGAAACCGTTGGAATGCCCCAA
TTGATGATGGAGCATAAACTTGGTCTTTTGTAAATGACAATTGGTTTTCTCGAATTGAAT
GAAACAGTCAGTCTTTCTTGAAACTATTATTACAAAAAGAAATAATAATGAAATACATTG
TCCTACCATCTTTGTATTACCAATAATGNTCTCAATATCATTTTGTAAGAANATAAAATG
ACAAATAT

consensusID : consensus_4551#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 225
fasta sequence

                              [GGGATTTCGAAAGTTTGCTTTATGTCAAAAGGAAACCAAATGCTGCATCCTGAATTCCCTGTNCGACCATTAATGTACACTGGTTTAGGCGATGTAATTGGTTCTACTGTATGGTCAAGTGCAAAAGCATCATCATTGGCTGCAATCCCAGGGTCTAAAGTGGAAAATTCAACTNGCTTNCCACATCCNGTACCTGAATCNCTTGCAAAATTTGGTAAANCANCT]

[+] EMBL AA559430             [GGGATTTCGAAAGTTTGCTTTATGTCAAAAGGAAACCAAATGCTGCATCCTGAATTCCCTGTNCGACCATTAATGTACACTGGTTTAGGCGATGTAATTGGTTCTACTGTATGGTCAAGTGCAAAAGCATCATCATTGGCTGCAATCCCAGGGTCTAAAGTGGAAAATTCAACTNGCTTNCCACATCCNGTACCTGAATCNCTTGCAAAATTTGGTAAANCANCT]




>consensus_4551#1
GGGATTTCGAAAGTTTGCTTTATGTCAAAAGGAAACCAAATGCTGCATCCTGAATTCCCT
GTNCGACCATTAATGTACACTGGTTTAGGCGATGTAATTGGTTCTACTGTATGGTCAAGT
GCAAAAGCATCATCATTGGCTGCAATCCCAGGGTCTAAAGTGGAAAATTCAACTNGCTTN
CCACATCCNGTACCTGAATCNCTTGCAAAATTTGGTAAANCANCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4551#0      -------------------------------CAAACCAAATGNTGNATCCTGNAATTCCC 29
consensus_4551#1      GGGATTTCGAAAGTTTGCTTTATGTCAAAAGGAAACCAAATGCTGCATCCTGAA-TTCCC 59
                                                      ********** ** ****** * *****

consensus_4551#0      TGTTCGACCATTAATGTACACTGGTTTAGGCGATGTAATTGGTTCTACTGTATGGTCAAG 89
consensus_4551#1      TGTNCGACCATTAATGTACACTGGTTTAGGCGATGTAATTGGTTCTACTGTATGGTCAAG 119
                      *** ********************************************************

consensus_4551#0      TGCAGAAGCATCATCATTGGCTGCAANCCCAGGGTCTAAAGTGGAAGATTCAACTAACTT 149
consensus_4551#1      TGCAAAAGCATCATCATTGGCTGCAATCCCAGGGTCTAAAGTGGAAAATTCAACTNGCTT 179
                      **** ********************* ******************* ********  ***

consensus_4551#0      NCCACATCCAGTNGNTGAATCACTNGCAAAATTTGGNAAAGCAGCTGAAAAAGCGAATAG 209
consensus_4551#1      NCCACATCCNGTACCTGAATCNCTTGCAAAATTTGGTAAANCANCT-------------- 225
                      ********* **   ****** ** *********** *** ** **              

consensus_4551#0      AATGAGAGTTTTAGCTTCTACTCAAGGTTTACATGCACCATTACGTCTATCTATGGAACA 269
consensus_4551#1      ------------------------------------------------------------
                                                                                  

consensus_4551#0      ACATATAATGCAACGGTATTCAACCACGTCTACCNGGGTTTATATTCTTATCATCCCTTA 329
consensus_4551#1      ------------------------------------------------------------
                                                                                  

consensus_4551#0      GCTAGNCANTTAANTGGGAGTNTTAGATGAGATTGATATAGCTGACTTTATAAATCCCCG 389
consensus_4551#1      ------------------------------------------------------------
                                                                                  

consensus_4551#0      CGAAGATTCTGAAACCGTTGGAATGCCCCAATTGATGATGGAGCATAAACTTGGTCTTTT 449
consensus_4551#1      ------------------------------------------------------------
                                                                                  

consensus_4551#0      GTAAATGACAATTGGTTTTCTCGAATTGAATGAAACAGTCAGTCTTTCTTGAAACTATTA 509
consensus_4551#1      ------------------------------------------------------------
                                                                                  

consensus_4551#0      TTACAAAAAGAAATAATAATGAAATACATTGTCCTACCATCTTTGTATTACCAATAATGN 569
consensus_4551#1      ------------------------------------------------------------
                                                                                  

consensus_4551#0      TCTCAATATCATTTTGTAAGAANATAAAATGACAAATAT 608
consensus_4551#1      ---------------------------------------