cluster # 4591

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Schistosoma mansoni
cluster # 4591 cluster # 4591 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4591#0 length = 520 sequences # 1

consensus_4591#1 length = 339 sequences # 2

consensusID : consensus_4591#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 520
fasta sequence

                              [TTTTTTTTTTTTTTTTTTAACATTATTTTTTATTCATGAATAATGATATACAATTAAATATTAATGAGACATTGATTTAAGTATCCATACAAAAAAAGCAACGACTATAAGTTCTTTTCAATATTTTCTTTTAATGGTTTAATCAATTCATGATTTTATTATCAGAAGGGGTTTTTGTAGAGATTTAGTATTTTCATAGTTGAAAGCGTGAGTCAATTGAAGCTAGACCACCAAGGAAGACCTGGAAGCACTGGACGACCGTTTTGTCCCATTGTGAGACTCCTCAGCAATGCTCATCCACGACCTCGCCTCGCGAGATTCGAACCAAGGACCTACTAGTCTTGTGCCAGAGCACTTAACCGATAGACCACTGAGCTGACCGGCATCCCCAGGTGTTAATGTCTAACTTCAACCAATCCACGAAAATGAGCAACCATTCACCAAATGTCGTCAATGAATTTCTATCTCACAACAGACGTGGTTTGATTTAAAGTTTCCAAAACATACCCCTGGAACAAAT]

[+] EMBL AI395354             [TTTTTTTTTTTTTTTTTTAACATTATTTTTTATTCATGAATAATGATATACAATTAAATATTAATGAGACATTGATTTAAGTATCCATACAAAAAAAGCAACGACTATAAGTTCTTTTCAATATTTTCTTTTAATGGTTTAATCAATTCATGATTTTATTATCAGAAGGGGTTTTTGTAGAGATTTAGTATTTTCATAGTTGAAAGCGTGAGTCAATTGAAGCTAGACCACCAAGGAAGACCTGGAAGCACTGGACGACCGTTTTGTCCCATTGTGAGACTCCTCAGCAATGCTCATCCACGACCTCGCCTCGCGAGATTCGAACCAAGGACCTACTAGTCTTGTGCCAGAGCACTTAACCGATAGACCACTGAGCTGACCGGCATCCCCAGGTGTTAATGTCTAACTTCAACCAATCCACGAAAATGAGCAACCATTCACCAAATGTCGTCAATGAATTTCTATCTCACAACAGACGTGGTTTGATTTAAAGTTTCCAAAACATACCCCTGGAACAAAT]




>consensus_4591#0
TTTTTTTTTTTTTTTTTTAACATTATTTTTTATTCATGAATAATGATATACAATTAAATA
TTAATGAGACATTGATTTAAGTATCCATACAAAAAAAGCAACGACTATAAGTTCTTTTCA
ATATTTTCTTTTAATGGTTTAATCAATTCATGATTTTATTATCAGAAGGGGTTTTTGTAG
AGATTTAGTATTTTCATAGTTGAAAGCGTGAGTCAATTGAAGCTAGACCACCAAGGAAGA
CCTGGAAGCACTGGACGACCGTTTTGTCCCATTGTGAGACTCCTCAGCAATGCTCATCCA
CGACCTCGCCTCGCGAGATTCGAACCAAGGACCTACTAGTCTTGTGCCAGAGCACTTAAC
CGATAGACCACTGAGCTGACCGGCATCCCCAGGTGTTAATGTCTAACTTCAACCAATCCA
CGAAAATGAGCAACCATTCACCAAATGTCGTCAATGAATTTCTATCTCACAACAGACGTG
GTTTGATTTAAAGTTTCCAAAACATACCCCTGGAACAAAT

consensusID : consensus_4591#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 339
fasta sequence

                              [TGATAGGTGGTGTTAATAAGCCTTTACGGTTATTAATGAAGGTGCCGTATTCATTACTTGGTAACATCTAGGGATGTCATACATTCTTTNTCAGTTCCTGACTTATATATAAAGATGGATGCAGNTCCAGGTCGAATTAATTGTTTAGGGGTAATATTAAGTCGTNTAGGGGTGTTTAGAGGTTATTGTTCAGAATTATGCGGTGTGGGTCATGCTTATATGCCTATAGTAGTCGAAGNTGTAATGAATAACANGATGTAAATAGNAGAAATCTTTATGATGTCAANTTNATTATCTATGGCTTCACTNGGGTTTACTTTTTAAAGGGNAGGCCTTTGA]

[+] EMBL SM575                [TGATAGGTGGTGTTAATAAGCCTTTACGGTTATTAATGAAGGTGCCGTATTCATTACTTGGTAACATCTAGGGATGTCATACATTCTTTNTCAGTTCCTGACTTATATATAAAGATGGATGCAGNTCCAGGTCGAATTAATTGTTTAGGGGTAATATTAAGTCGTNTAGGGGTGTTTAGAGGTTATTGTTCAGAATTATGCGGTGTGGGTCATGCTTATATGCCTATAGTAGTCGAAGNTGTAATGAATAACANGATGTAAATAGNAGAAATCTTTATGATGTCAANTTNATTATCTATGGCTTCACTNGGGTTTACTTTTTAAAGGGNAGGCCTTTGA]
[+] EMBL AA559691             [                                                                                                                                                                GTCGTTTAGGGGTGTTTAGAGGTTATTGTTCAGAATTATGCGGTGTGGGTCATGCTTATATGCCTATAGTACTCGAANTTGTANTNAATAACANGATNTAAAT                                                                            ]




>consensus_4591#1
TGATAGGTGGTGTTAATAAGCCTTTACGGTTATTAATGAAGGTGCCGTATTCATTACTTG
GTAACATCTAGGGATGTCATACATTCTTTNTCAGTTCCTGACTTATATATAAAGATGGAT
GCAGNTCCAGGTCGAATTAATTGTTTAGGGGTAATATTAAGTCGTNTAGGGGTGTTTAGA
GGTTATTGTTCAGAATTATGCGGTGTGGGTCATGCTTATATGCCTATAGTAGTCGAAGNT
GTAATGAATAACANGATGTAAATAGNAGAAATCTTTATGATGTCAANTTNATTATCTATG
GCTTCACTNGGGTTTACTTTTTAAAGGGNAGGCCTTTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4591#0      TTTTTTTTTTTTTTTTTTAACATTATTTTTTATTCATGAATAATGATATACAATTAAATA 60
consensus_4591#1      ------------------------------------------------------------
                                                                                  

consensus_4591#0      TTAATGAGACATTGATTTAAGTATCCATACAAAAAAAGCAACGACTATAAGTTCTTTTCA 120
consensus_4591#1      -------------------------------TGATAGGTGGTGTTAATAAGCCTTT---- 25
                                                       * * *    *   *****   **    

consensus_4591#0      ATATTTTCTTTTAATGGTTTAATCAATTCATGATTTTATTATCAGAAGGGGTTTTTGTAG 180
consensus_4591#1      ACGGTTATTAATGAAGGTGCCGT--ATTCATTACTTGGT-AACATCTAGGGATGTCATAC 82
                      *   **  *  * * ***    *  ****** * **  * * **    *** * *  ** 

consensus_4591#0      AGATTTAGTATTTTCATAGTTGAAAGCGTGAGTCAATTGAAGCTAGACCACCAAGGAAGA 240
consensus_4591#1      ATTCTTTNTCAGTTCCTGACTTATATATAAAGATGGATGCAGNT-------CCAGGTCGA 135
                      *   **  *   *** *   * * *     **     ** ** *       * ***  **

consensus_4591#0      CCTGGAAGCACTGGACGACCGTTTTGTCCCATTGTGAGACTCCTCAGCAATGCTCATCCA 300
consensus_4591#1      ATTAATTGTTTAGGGGTAATATTAAGTCG---TNTAGGGGTGTTTAGAGGTTATTGTTCA 192
                        *    *    **   *   **  ***    * *  *  *  * **   *  *  * **

consensus_4591#0      CGACCTCGCCTCGCGAGATTCGAACCAAGGACCTACTAGTCTTGTGCCAGAGCACTTAAC 360
consensus_4591#1      GAATTATGC-------GGTGTGGGTCATGCTTATATGCCTATAGTAGTCGAAGNTGTAAT 245
                        *    **       * *  *   ** *    **    * * **    **     *** 

consensus_4591#0      CGATAGACCACTG-AGCTGACCGGCATCCCCA-GGTGTTAATGTCTAACTTCAACCAATC 418
consensus_4591#1      GAATAACANGATGTAAATAGNAGAAATCTTTATGATGTCAAN-TTNATTATCTATGGCTT 304
                        ***      ** *  *    *  ***   * * *** **  *  *   ** *    * 

consensus_4591#0      CACGAAAATGAGCAACCATTCACCAAATGTCGTCAATGAATTTCTATCTCACAACAGACG 478
consensus_4591#1      CACTNGGGT---TTACTTTTTA--AAGGGNAGGCCTTTGA-------------------- 339
                      ***     *     **  ** *  **  *  * *  *  *                    

consensus_4591#0      TGGTTTGATTTAAAGTTTCCAAAACATACCCCTGGAACAAAT 520
consensus_4591#1      ------------------------------------------