These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_460#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 572 fasta sequence [AAAGGAAAACATCAAGAAAACTTTAATGATAATCGATTAATGTGTATGTAAGTTGCCAAACCATACTAACTTGTTACCATAAGTGGATCAACCCAGAACATTTAGTTAGGAACTTCATTGAGCCTAACAAATATTTTGGTACTTATAACATATATTTAGACCAAAGATAATTGTGTTTACTTATAATTAACATTAGGACGAACTCCGCCTGGAGCCCCTCTGAGAACTACCGCAGGACTCAAGCCCGGATAAAGTAGGAGGGTTGAATATGGGGTTAGTGACCCCATCCCGTAGAAAACTAACTCGCTAAAAAAACACTAACCACAGAAAATAATTTAAGCCATTTGAACTGTGTCCTAGAAGTTAGTATGTCTTTATTTACAAGTGTTATGGCGCTTCATGGTAAAAGCCGAGTTCCTTCAGAAGTCACGAGGCTGATGCCCCTTCTGACAACCAGAGAAACCATTAATTTAGGTACATGGAATGTTTGTACAACGTGGAAGACCGGAAGAGCCATCCAAATTGCTGCAGAAATGAGAAAATACAACCTGNAGGTGCTTGAAATCAGTGAA] [+] EMBL CD094894 [AAAGGAAAACATCAAGAAAACTTTAATGATAATCGATTAATGTGTATGTAAGTTGCCAAACCATACTAACTTGTTACCATAAGTGGATCAACCCAGAACATTTAGTTAGGAACTTCATTGAGCCTAACAAATATTTTGGTACTTATAACATATATTTAGACCAAAGATAATTGTGTTTACTTATAATTAACATTAGGACGAACTCCGCCTGGAGCCCCTCTGAGAACTACCGCAGGACTCAAGCCCGGATAAAGTAGGAGGGTTGAATATGGGGTTAGTGACCCCATCCCGTAGAAAACTAACTCGCTAAAAAAACACTAACCACAGAAAATAATTTAAGCCATTTGAACTGTGTCCTAGAAGTTAGTATGTCTTTATTTACAAGTGTTATGGCGCTTCATGGTAAAAGCCGAGTTCCTTCAGAAGTCACGAGGCTGATGCCCCTTCTGACAACCAGAGAAACCATTAATTTAGGTACATGGAATGTTTGTACAACGTGGAAGACCGGAAGAGCCATCCAAATTGCTGCAGAAATGAGAAAATACAACCTGNAGGTGCTTGAAATCAGTGAA] consensusID : consensus_460#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 397 fasta sequence [TTCAACTGCCATGAGGTTTGCGAAAACCCTGATTTGCTGAGCTACGACAATATCATTTTTGAAAATGATTCGTACCGTTATTCTCTTCATTATCATTATTCAATGAGGATTCGGCTTAATCAGTCTCAACTAGCTTTTAATGACAGTTATCGAAACTTTCCCTTTCCATACTTTTTTAAACCGAAGTTCTCCTTTCGATTCTACGATACTCTAATCGATGATGTTTATATTTACTATTATGGTAAGCCAATAAATTTCGTTGAGCTCGTATTATGACTGAGTTTTCTTGATCAAATTTCTCTTCATGAATCAAAGTTGATTCAACTTCTTCAGTAAACCAGTTTGAGGTTCCTTGTTACATGAAAAACGTCTTTGAATATCTGTTCTCGTTCGAACT] [+] EMBL CD147778 [TTCAACTGCCATGAGGTTTGCGAAAACCCTGATTTGCTGAGCTACGACAATATCATTTTTGAAAATGATTCGTACCGTTATTCTCTTCATTATCATTATTCAATGAGGATTCGGCTTAATCAGTCTCAACTAGCTTTTAATGACAGTTATCGAAACTTTCCCTTTCCATACTTTTTTAAACCGAAGTTCTCCTTTCGATTCTACGATACTCTAATCGATGATGTTTATATTTACTATTATGGTAAGCCAATAAATTTCGTTGAGCTCGTATTATGACTGAGTTTTCTTGATCAAATTTCTCTTCATGAATCAAAGTTGATTCAACTTCTTCAGTAAACCAGTTTGAGGTTCCTTGTTACATGAAAAACGTCTTTGAATATCTGTTCTCGTTCGAACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_460#0 AAAGGAAAACATCAAGAAAACTTTAATGATAATCGATTAATGTGTATGTAAGTTGCCAAA 60 consensus_460#1 ------------------------------------------------------------ consensus_460#0 CCATACTAACTTGTTACCATAAGTGGATCAAC--CCAGAACATTTAGTTAGGAACTTCAT 118 consensus_460#1 --------------------------TTCAACTGCCATGAGGTTTG--CGAAAACCCTGA 32 ***** *** * *** *** consensus_460#0 TGAGCCTAACAAATATTTTGGTACTTATAACATATATTTAGACCAAAGATAATTGTGTTT 178 consensus_460#1 TTTGCTGAGCTACGACAATATCATTTTTGAAAATGATTCGTACCGTTATTCTCTTCATTA 92 * ** * * * * * * ** * * * *** *** * * ** consensus_460#0 AC-TTAT--AATTAACATTAGGACGAACTCCGCCTGGAGCCCCTCTGAGAACTACCGCAG 235 consensus_460#1 TCATTATTCAATGAGGATTCGGCTTAATCAGTCTCAACTAGCTTTTAATGACAGTTATCG 152 * **** *** * *** ** ** * * * * * ** * consensus_460#0 GACTCAAGCCCGGATAAAGTAGGAGGGTTGAATATGGGGTTAGTGACCCCATCCCGTAGA 295 consensus_460#1 AAACTTTCCCTTTCCATACTTT-----TTTAAACCGAAGTTCTCCTTTCGATTCTACGAT 207 * ** * * * ** ** * *** * ** * consensus_460#0 AAACTAACTCGCTAAAAAAACACTAACCAC---AGAAAATAATTTAAGCCATTTGAACTG 352 consensus_460#1 ACTCTAATCGATGATGTTTATATTTACTATTATGGTAAGCCAATAAATTTCGTTGAGCT- 266 * **** * * * * ** * * ** * * ** **** ** consensus_460#0 TGTCCTAGAAGTTAGTATGTCTTTATTTACAAGTGTTATGGCGCTTCATGGTAAAAGCCG 412 consensus_460#1 CGTATTATGACTGAGTTT--TCTTGATCAAATTTCTCTTCATGAATCAAAGTTGA--TTC 322 ** ** * * *** * ** * * * * * * * *** ** * consensus_460#0 AGTTCCTTCAGAAGTCACGAGGCTGATGCCCCTTCTGACAACCAGAGAAACCATTAATTT 472 consensus_460#1 AACTTCTTCAGTAA--ACCAGTTTGAGGTTCCTTGTTACATGAAAAACGTCTTTGAATAT 380 * * ****** * ** ** *** * **** * *** * * * * *** * consensus_460#0 AGGTACATGGAATGTTTGTACAACGTGGAAGACCGGAAGAGCCATCCAAATTGCTGCAGA 532 consensus_460#1 CTGTTCTCG-----TTCGAACT-------------------------------------- 397 ** * * ** * ** consensus_460#0 AATGAGAAAATACAACCTGNAGGTGCTTGAAATCAGTGAA 572 consensus_460#1 ---------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||