These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4607#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 354 fasta sequence [AACCTGCACACTAAGGCAGAGAAGCTCCACGAACCTTTCCGTAGTCTCCTTTGCCAATAACACGTTGAATTTTGAAGTTTTCAGCATTAACACGATTGTTCGGATTGACTGTCTTCTGACATATCTCGACAGTTTCTTGAGTTGTTATCTCTTCTTTGTTCTCCGAACAAATTAACTCCTTTGACAATTGATCTGAAGACTTGGTATTATTTTTCCCCGGAGACGATAGGTTGAGTCTGTCTGTTTCATCGTCTCTACACTCATCATCATTTTCAAGTTCAGCAGACAAAAAGTCAATCTCTGCCATCCACTACAAGAGGGGAAAGTCAA-GAAAGAGCAGATCAGTGATGAATG] [+] EMBL CD097814 [AACCTGCACACTAAGGCAGAGAAGCTCCACGAACCTTTCCGTAGTCTCCTTTGCCAATAACACGTTGAATTTTGAAGTTTTCAGCATTAACACGATTGTTCGGATTGACTGTCTTCTGACATATCTCGACAGTTTCTTGAGTTGTTATCTCTTCTTTGTTCTCCGAACAAATTAACTCCTTTGACAATTGATCTGAAGACTTGGTATTATTTTTCCCCGGAGACGATAGGTTGAGTCTGTCTGTTTCATCGTCTCTACACTCATCATCATTTTCAAGTTCAGCAGACAAAAAGTCAATCTCTGCCATCCACTACAAGAGGGGAAAGTCAA GAAAGAGCAGATCAGTGATG ] [+] EMBL CD112046 [ AATTTTGAAGTTTTCAGCATTAACACGATTGTTCGGATTGACTGTCTTCTGACATATCTCGACAGTTTCTTGAGTTGTTATCTCTTCTTTGTTCTCCGAACAAATTAACTCCTTTGACAATTGATCTGAAGACTTGGTATTATTTTTCCCCGGAGACGATAGGTTGAGTCTGTCTGTTTCATCGTCTCTACACTCATCATCATTTTCAAGTTCAGCAGACAAAAAGTCAATCTCTGCCATCCACTACAAGAGGGGAAAGTCAACCAAAGAGCAGATCAGTGATGAATG] consensusID : consensus_4607#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 286 fasta sequence [TCCTTGATCAATGCCATCAACCTTCTGAACTAGAAAAACCTTTCCGTAGCCTCCTTGCCAATAACACGTTGAATTTTGAAGTTTTCAGCATTAACACGATTGTTCGGATTGACTGTCTTCTGACATATCTCGACAGTTTCTTGAGTTGTTATCTCTTCTTTGTTCTCCGAACAAATTAACTCCTTTGACAATTGATCTGAAGACTTGGTATTATTTTTCCCCGGAGACGATAGGTTGAGTCTGTCCGTTTCATCGTCTCTACACTCATCATCATTTTCAAGTTCAG] [+] EMBL CD068234 [TCCTTGATCAATGCCATCAACCTTCTGAACTAGAAAAACCTTTCCGTAGCCTCCTTGCCAATAACACGTTGAATTTTGAAGTTTTCAGCATTAACACGATTGTTCGGATTGACTGTCTTCTGACATATCTCGACAGTTTCTTGAGTTGTTATCTCTTCTTTGTTCTCCGAACAAATTAACTCCTTTGACAATTGATCTGAAGACTTGGTATTATTTTTCCCCGGAGACGATAGGTTGAGTCTGTCCGTTTCATCGTCTCTACACTCATCATCATTTTCAAGTTCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4607#0 -----AACCTGCACACTAAGGCAGAGAAGCTCCACGAACCTTTCCGTAGTCTCCTTTGCC 55 consensus_4607#1 TCCTTGATCAATGCCATCAACCTTCTGAACTAGAAAAACCTTTCCGTAGCCTCCTT-GCC 59 * * * * * * * ** * ************* ****** *** consensus_4607#0 AATAACACGTTGAATTTTGAAGTTTTCAGCATTAACACGATTGTTCGGATTGACTGTCTT 115 consensus_4607#1 AATAACACGTTGAATTTTGAAGTTTTCAGCATTAACACGATTGTTCGGATTGACTGTCTT 119 ************************************************************ consensus_4607#0 CTGACATATCTCGACAGTTTCTTGAGTTGTTATCTCTTCTTTGTTCTCCGAACAAATTAA 175 consensus_4607#1 CTGACATATCTCGACAGTTTCTTGAGTTGTTATCTCTTCTTTGTTCTCCGAACAAATTAA 179 ************************************************************ consensus_4607#0 CTCCTTTGACAATTGATCTGAAGACTTGGTATTATTTTTCCCCGGAGACGATAGGTTGAG 235 consensus_4607#1 CTCCTTTGACAATTGATCTGAAGACTTGGTATTATTTTTCCCCGGAGACGATAGGTTGAG 239 ************************************************************ consensus_4607#0 TCTGTCTGTTTCATCGTCTCTACACTCATCATCATTTTCAAGTTCAGCAGACAAAAAGTC 295 consensus_4607#1 TCTGTCCGTTTCATCGTCTCTACACTCATCATCATTTTCAAGTTCAG------------- 286 ****** **************************************** consensus_4607#0 AATCTCTGCCATCCACTACAAGAGGGGAAAGTCAAGAAAGAGCAGATCAGTGATGAATG 354 consensus_4607#1 ----------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||