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These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 4612 cluster # 4612       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4612#0 length = 683 sequences # 2  
consensus_4612#1 length = 359 sequences # 1  

consensusID : consensus_4612#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 683
fasta sequence
                              [CCTCGNAGCCAANAATTCGGCACGAGGTAAAAAGCAACTTCAGCACACTGTTTATTTTCTGTCTGGCGTTGTTTCTTGTCCTGTTATGCAACCTCTTACAACCTCTAATGGCGAGATTTTTTCTAGATTCTAAGCGCTCACCTGGTTCATTCTCAGAACTTGTTTCCATTTGTCTGGAAAATGGGAGCATCATGTCTACTACTGATCTCAGCCATTGGATATCTAGCTATCTTTATAGTGCACTTAATATCGCAAATAAACTTGCTCCGTGTCATCGGAATCATCCTCTCTCGTTTTTCATTATTTCAAGCTCTATTAGCATTGGATGCATCGTACTTAGCATGTATGTTTCCGGCGTAACCTTAGCTTATATAGCTCTCAATATTTGTCTAATTTTACCAACTTTGCTGCATCATCGTGTAATTTCCCGTGTTTGGGACTTGATTAAACCTATTTTAAAGCGTATCGAAGCGGAGTTCGATAAAAATCCGTTAGAATCTCCCGAAGAACGTGATGCTGGTGAGCGAGAACTTTACGAGCCTATTGTTGAAGCTGCAAATGCTGCANATTCTTCCGTATTCCCTGTTGGATTTTTAACAGACGTACCCATGANACTGGAATCTAATCAGCTAGAGTCAGAAGAACTAGANNTACTCGAAGCAGTATTCATCANACAGTTTGTT]

[+] EMBL CD082623             [CCTCGNAGCCAANAATTCGGCACGAGGTAAAAAGCAACTTCAGCACACTGTTTATTTTCTGTCTGGCGTTGTTTCTTGTCCTGTTATGCAACCTCTTACAACCTCTAATGGCGAGATTTTTTCTAGATTCTAAGCGCTCACCTGGTTCATTCTCAGAACTTGTTTCCATTTGTCTGGAAAATGGGAGCATCATGTCTACTACTGATCTCAGCCATTGGATATCTAGCTATCTTTATAGTGCACTTAATATCGCAAATAAACTTGCTCCGTGTCATCGGAATCATCCTCTCTCGTTTTTCATTATTTCAAGCTCTATTAGCATTGGATGCATCGTACTTAGCATGTATGTTTCCGGCGTAACCTTAGCTTATATAGCTCTCAATATTTGTCTAATTTTACCAACTTTGCTGCATCATCGTGTAATTTCCCGTGTTTGGGACTTGATTAAACCTATTTTAAAGCGTATCGAAGCGGAGTTCGATAAAAATCCGTTAGAATCTCCCGAAGAACGTGATGCTGGTGAGCGAGAACTTTACGAGCCTATTGTTGAAGCTGCAAATGCTGCANATTCTTCCGTATTCCCTGTTGGATTTTTAACAGACGTACCCATGANACTGGAATCTAATCAGCTAGAGTCAGAAGAACTAGANNTACTCGAAGCAGTATTCATCANACAGTTTGTT]
[+] EMBL CD144713             [                                                                                                                                      CGCTCACCTGGTTCATTCTCAGAACTTGTTTCCATTTGTCTGGAAAATGGGAGCATCATGTCTACTACTGATCTCAGCCATTGGATATCTAGCTATCTTTATAGTGCACTTAATATCGCAAATAAACTTGCTCCGTGTCATCGGAATCATCCTCTCTCGTTTTTCATTATTTCAAGCTCTATTAGCATTGGATGCATCGTACTTAGCATGTATGTTTCCGGCGTAACCTTAGCTTATATAGCTCTCAATATT                                                                                                                                                                                                                                                                                                         ]


>consensus_4612#0 CCTCGNAGCCAANAATTCGGCACGAGGTAAAAAGCAACTTCAGCACACTGTTTATTTTCT GTCTGGCGTTGTTTCTTGTCCTGTTATGCAACCTCTTACAACCTCTAATGGCGAGATTTT TTCTAGATTCTAAGCGCTCACCTGGTTCATTCTCAGAACTTGTTTCCATTTGTCTGGAAA ATGGGAGCATCATGTCTACTACTGATCTCAGCCATTGGATATCTAGCTATCTTTATAGTG CACTTAATATCGCAAATAAACTTGCTCCGTGTCATCGGAATCATCCTCTCTCGTTTTTCA TTATTTCAAGCTCTATTAGCATTGGATGCATCGTACTTAGCATGTATGTTTCCGGCGTAA CCTTAGCTTATATAGCTCTCAATATTTGTCTAATTTTACCAACTTTGCTGCATCATCGTG TAATTTCCCGTGTTTGGGACTTGATTAAACCTATTTTAAAGCGTATCGAAGCGGAGTTCG ATAAAAATCCGTTAGAATCTCCCGAAGAACGTGATGCTGGTGAGCGAGAACTTTACGAGC CTATTGTTGAAGCTGCAAATGCTGCANATTCTTCCGTATTCCCTGTTGGATTTTTAACAG ACGTACCCATGANACTGGAATCTAATCAGCTAGAGTCAGAAGAACTAGANNTACTCGAAG CAGTATTCATCANACAGTTTGTT



consensusID : consensus_4612#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 359
fasta sequence
                              [AATTACCTACAACTGAATATCACTATGCGAAGTCCCCATGATAAGTTTTCTATGATGTCTATAGTGTGATAAGTCAATGGGAGTTCATAATTCTTCGCATCCAGACAATACTTTTGTGGGAACGTGTGGTCCCAAGTTTTGTTTTCACAGCATTCGTACACCTTGTGTTCTTATCATTTATAAAAAGCAACTTCAGCACACTGTTTATTTTCTGTCTGGCGTTGTTTCTTGTCCTGTTATGCAACCTCTTACAACCTCTAATGGCGAGATTTTTTCTAGATTCTAAGCGCTCACCTGGTTCATTCTCAGAACTTGTTTCCATTTGTCTGGAAAATGGGAGCATCATGTCTACTACTGAT]

[-] EMBL CD068243             [AATTACCTACAACTGAATATCACTATGCGAAGTCCCCATGATAAGTTTTCTATGATGTCTATAGTGTGATAAGTCAATGGGAGTTCATAATTCTTCGCATCCAGACAATACTTTTGTGGGAACGTGTGGTCCCAAGTTTTGTTTTCACAGCATTCGTACACCTTGTGTTCTTATCATTTATAAAAAGCAACTTCAGCACACTGTTTATTTTCTGTCTGGCGTTGTTTCTTGTCCTGTTATGCAACCTCTTACAACCTCTAATGGCGAGATTTTTTCTAGATTCTAAGCGCTCACCTGGTTCATTCTCAGAACTTGTTTCCATTTGTCTGGAAAATGGGAGCATCATGTCTACTACTGAT]


>consensus_4612#1 AATTACCTACAACTGAATATCACTATGCGAAGTCCCCATGATAAGTTTTCTATGATGTCT ATAGTGTGATAAGTCAATGGGAGTTCATAATTCTTCGCATCCAGACAATACTTTTGTGGG AACGTGTGGTCCCAAGTTTTGTTTTCACAGCATTCGTACACCTTGTGTTCTTATCATTTA TAAAAAGCAACTTCAGCACACTGTTTATTTTCTGTCTGGCGTTGTTTCTTGTCCTGTTAT GCAACCTCTTACAACCTCTAATGGCGAGATTTTTTCTAGATTCTAAGCGCTCACCTGGTT CATTCTCAGAACTTGTTTCCATTTGTCTGGAAAATGGGAGCATCATGTCTACTACTGAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4612#0      ------------------------------------------------------------
consensus_4612#1      AATTACCTACAACTGAATATCACTATGCGAAGTCCCCATGATAAGTTTTCTATGATGTCT 60
                                                                                  

consensus_4612#0      ------------------------------------------------------------
consensus_4612#1      ATAGTGTGATAAGTCAATGGGAGTTCATAATTCTTCGCATCCAGACAATACTTTTGTGGG 120
                                                                                  

consensus_4612#0      ---------------------------------CCTCGNAGCCAANAATTCGGCACGAGG 27
consensus_4612#1      AACGTGTGGTCCCAAGTTTTGTTTTCACAGCATTCGTACACCTTGTGTTCTTATCATTTA 180
                                                        *    * *      *           

consensus_4612#0      TAAAAAGCAACTTCAGCACACTGTTTATTTTCTGTCTGGCGTTGTTTCTTGTCCTGTTAT 87
consensus_4612#1      TAAAAAGCAACTTCAGCACACTGTTTATTTTCTGTCTGGCGTTGTTTCTTGTCCTGTTAT 240
                      ************************************************************

consensus_4612#0      GCAACCTCTTACAACCTCTAATGGCGAGATTTTTTCTAGATTCTAAGCGCTCACCTGGTT 147
consensus_4612#1      GCAACCTCTTACAACCTCTAATGGCGAGATTTTTTCTAGATTCTAAGCGCTCACCTGGTT 300
                      ************************************************************

consensus_4612#0      CATTCTCAGAACTTGTTTCCATTTGTCTGGAAAATGGGAGCATCATGTCTACTACTGATC 207
consensus_4612#1      CATTCTCAGAACTTGTTTCCATTTGTCTGGAAAATGGGAGCATCATGTCTACTACTGAT- 359
                      *********************************************************** 

consensus_4612#0      TCAGCCATTGGATATCTAGCTATCTTTATAGTGCACTTAATATCGCAAATAAACTTGCTC 267
consensus_4612#1      ------------------------------------------------------------
                                                                                  

consensus_4612#0      CGTGTCATCGGAATCATCCTCTCTCGTTTTTCATTATTTCAAGCTCTATTAGCATTGGAT 327
consensus_4612#1      ------------------------------------------------------------
                                                                                  

consensus_4612#0      GCATCGTACTTAGCATGTATGTTTCCGGCGTAACCTTAGCTTATATAGCTCTCAATATTT 387
consensus_4612#1      ------------------------------------------------------------
                                                                                  

consensus_4612#0      GTCTAATTTTACCAACTTTGCTGCATCATCGTGTAATTTCCCGTGTTTGGGACTTGATTA 447
consensus_4612#1      ------------------------------------------------------------
                                                                                  

consensus_4612#0      AACCTATTTTAAAGCGTATCGAAGCGGAGTTCGATAAAAATCCGTTAGAATCTCCCGAAG 507
consensus_4612#1      ------------------------------------------------------------
                                                                                  

consensus_4612#0      AACGTGATGCTGGTGAGCGAGAACTTTACGAGCCTATTGTTGAAGCTGCAAATGCTGCAN 567
consensus_4612#1      ------------------------------------------------------------
                                                                                  

consensus_4612#0      ATTCTTCCGTATTCCCTGTTGGATTTTTAACAGACGTACCCATGANACTGGAATCTAATC 627
consensus_4612#1      ------------------------------------------------------------
                                                                                  

consensus_4612#0      AGCTAGAGTCAGAAGAACTAGANNTACTCGAAGCAGTATTCATCANACAGTTTGTT 683
consensus_4612#1      --------------------------------------------------------
                                                                              




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)