These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4612#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 683 fasta sequence [CCTCGNAGCCAANAATTCGGCACGAGGTAAAAAGCAACTTCAGCACACTGTTTATTTTCTGTCTGGCGTTGTTTCTTGTCCTGTTATGCAACCTCTTACAACCTCTAATGGCGAGATTTTTTCTAGATTCTAAGCGCTCACCTGGTTCATTCTCAGAACTTGTTTCCATTTGTCTGGAAAATGGGAGCATCATGTCTACTACTGATCTCAGCCATTGGATATCTAGCTATCTTTATAGTGCACTTAATATCGCAAATAAACTTGCTCCGTGTCATCGGAATCATCCTCTCTCGTTTTTCATTATTTCAAGCTCTATTAGCATTGGATGCATCGTACTTAGCATGTATGTTTCCGGCGTAACCTTAGCTTATATAGCTCTCAATATTTGTCTAATTTTACCAACTTTGCTGCATCATCGTGTAATTTCCCGTGTTTGGGACTTGATTAAACCTATTTTAAAGCGTATCGAAGCGGAGTTCGATAAAAATCCGTTAGAATCTCCCGAAGAACGTGATGCTGGTGAGCGAGAACTTTACGAGCCTATTGTTGAAGCTGCAAATGCTGCANATTCTTCCGTATTCCCTGTTGGATTTTTAACAGACGTACCCATGANACTGGAATCTAATCAGCTAGAGTCAGAAGAACTAGANNTACTCGAAGCAGTATTCATCANACAGTTTGTT] [+] EMBL CD082623 [CCTCGNAGCCAANAATTCGGCACGAGGTAAAAAGCAACTTCAGCACACTGTTTATTTTCTGTCTGGCGTTGTTTCTTGTCCTGTTATGCAACCTCTTACAACCTCTAATGGCGAGATTTTTTCTAGATTCTAAGCGCTCACCTGGTTCATTCTCAGAACTTGTTTCCATTTGTCTGGAAAATGGGAGCATCATGTCTACTACTGATCTCAGCCATTGGATATCTAGCTATCTTTATAGTGCACTTAATATCGCAAATAAACTTGCTCCGTGTCATCGGAATCATCCTCTCTCGTTTTTCATTATTTCAAGCTCTATTAGCATTGGATGCATCGTACTTAGCATGTATGTTTCCGGCGTAACCTTAGCTTATATAGCTCTCAATATTTGTCTAATTTTACCAACTTTGCTGCATCATCGTGTAATTTCCCGTGTTTGGGACTTGATTAAACCTATTTTAAAGCGTATCGAAGCGGAGTTCGATAAAAATCCGTTAGAATCTCCCGAAGAACGTGATGCTGGTGAGCGAGAACTTTACGAGCCTATTGTTGAAGCTGCAAATGCTGCANATTCTTCCGTATTCCCTGTTGGATTTTTAACAGACGTACCCATGANACTGGAATCTAATCAGCTAGAGTCAGAAGAACTAGANNTACTCGAAGCAGTATTCATCANACAGTTTGTT] [+] EMBL CD144713 [ CGCTCACCTGGTTCATTCTCAGAACTTGTTTCCATTTGTCTGGAAAATGGGAGCATCATGTCTACTACTGATCTCAGCCATTGGATATCTAGCTATCTTTATAGTGCACTTAATATCGCAAATAAACTTGCTCCGTGTCATCGGAATCATCCTCTCTCGTTTTTCATTATTTCAAGCTCTATTAGCATTGGATGCATCGTACTTAGCATGTATGTTTCCGGCGTAACCTTAGCTTATATAGCTCTCAATATT ] consensusID : consensus_4612#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 359 fasta sequence [AATTACCTACAACTGAATATCACTATGCGAAGTCCCCATGATAAGTTTTCTATGATGTCTATAGTGTGATAAGTCAATGGGAGTTCATAATTCTTCGCATCCAGACAATACTTTTGTGGGAACGTGTGGTCCCAAGTTTTGTTTTCACAGCATTCGTACACCTTGTGTTCTTATCATTTATAAAAAGCAACTTCAGCACACTGTTTATTTTCTGTCTGGCGTTGTTTCTTGTCCTGTTATGCAACCTCTTACAACCTCTAATGGCGAGATTTTTTCTAGATTCTAAGCGCTCACCTGGTTCATTCTCAGAACTTGTTTCCATTTGTCTGGAAAATGGGAGCATCATGTCTACTACTGAT] [-] EMBL CD068243 [AATTACCTACAACTGAATATCACTATGCGAAGTCCCCATGATAAGTTTTCTATGATGTCTATAGTGTGATAAGTCAATGGGAGTTCATAATTCTTCGCATCCAGACAATACTTTTGTGGGAACGTGTGGTCCCAAGTTTTGTTTTCACAGCATTCGTACACCTTGTGTTCTTATCATTTATAAAAAGCAACTTCAGCACACTGTTTATTTTCTGTCTGGCGTTGTTTCTTGTCCTGTTATGCAACCTCTTACAACCTCTAATGGCGAGATTTTTTCTAGATTCTAAGCGCTCACCTGGTTCATTCTCAGAACTTGTTTCCATTTGTCTGGAAAATGGGAGCATCATGTCTACTACTGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4612#0 ------------------------------------------------------------ consensus_4612#1 AATTACCTACAACTGAATATCACTATGCGAAGTCCCCATGATAAGTTTTCTATGATGTCT 60 consensus_4612#0 ------------------------------------------------------------ consensus_4612#1 ATAGTGTGATAAGTCAATGGGAGTTCATAATTCTTCGCATCCAGACAATACTTTTGTGGG 120 consensus_4612#0 ---------------------------------CCTCGNAGCCAANAATTCGGCACGAGG 27 consensus_4612#1 AACGTGTGGTCCCAAGTTTTGTTTTCACAGCATTCGTACACCTTGTGTTCTTATCATTTA 180 * * * * consensus_4612#0 TAAAAAGCAACTTCAGCACACTGTTTATTTTCTGTCTGGCGTTGTTTCTTGTCCTGTTAT 87 consensus_4612#1 TAAAAAGCAACTTCAGCACACTGTTTATTTTCTGTCTGGCGTTGTTTCTTGTCCTGTTAT 240 ************************************************************ consensus_4612#0 GCAACCTCTTACAACCTCTAATGGCGAGATTTTTTCTAGATTCTAAGCGCTCACCTGGTT 147 consensus_4612#1 GCAACCTCTTACAACCTCTAATGGCGAGATTTTTTCTAGATTCTAAGCGCTCACCTGGTT 300 ************************************************************ consensus_4612#0 CATTCTCAGAACTTGTTTCCATTTGTCTGGAAAATGGGAGCATCATGTCTACTACTGATC 207 consensus_4612#1 CATTCTCAGAACTTGTTTCCATTTGTCTGGAAAATGGGAGCATCATGTCTACTACTGAT- 359 *********************************************************** consensus_4612#0 TCAGCCATTGGATATCTAGCTATCTTTATAGTGCACTTAATATCGCAAATAAACTTGCTC 267 consensus_4612#1 ------------------------------------------------------------ consensus_4612#0 CGTGTCATCGGAATCATCCTCTCTCGTTTTTCATTATTTCAAGCTCTATTAGCATTGGAT 327 consensus_4612#1 ------------------------------------------------------------ consensus_4612#0 GCATCGTACTTAGCATGTATGTTTCCGGCGTAACCTTAGCTTATATAGCTCTCAATATTT 387 consensus_4612#1 ------------------------------------------------------------ consensus_4612#0 GTCTAATTTTACCAACTTTGCTGCATCATCGTGTAATTTCCCGTGTTTGGGACTTGATTA 447 consensus_4612#1 ------------------------------------------------------------ consensus_4612#0 AACCTATTTTAAAGCGTATCGAAGCGGAGTTCGATAAAAATCCGTTAGAATCTCCCGAAG 507 consensus_4612#1 ------------------------------------------------------------ consensus_4612#0 AACGTGATGCTGGTGAGCGAGAACTTTACGAGCCTATTGTTGAAGCTGCAAATGCTGCAN 567 consensus_4612#1 ------------------------------------------------------------ consensus_4612#0 ATTCTTCCGTATTCCCTGTTGGATTTTTAACAGACGTACCCATGANACTGGAATCTAATC 627 consensus_4612#1 ------------------------------------------------------------ consensus_4612#0 AGCTAGAGTCAGAAGAACTAGANNTACTCGAAGCAGTATTCATCANACAGTTTGTT 683 consensus_4612#1 -------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||