These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4636#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 461 fasta sequence [CAAGCGTTGGTAGCTAATATATGAGTACACCCGAGATCTTTCAAGGCCCAAACGTTGGCGCGATAGTTGACTTCGCTGGGTGGAATTAAGTGTCCTTTACCATGTCACGTTGTCGAGTAGCTGATATTAAACGTTGTAATGTGATTGGTCTTGCTCTATTTCTGTTAAACCTCGCATTTTTGAGCTAAAGATGCCTGAATAAGTTTTGTAATGACCATTGTTATTCGTAAACGATTGTTCGCTGTCGACAGTAGTACCATATATGTCATTCAGAAGTACAGTAACCTGGGAAGTACAACACATGCAACATCTCCAACAAAACCTTCGACAAGAGTGTCTGACGGCTTTCCAAACGGAGTAGTTACTTGTCGCACTCCTACTTTTTTGAATAGATTAGGGTCATCGAATCCAGAACCCCCAATAATTCCAACCTTAACTTTAGACATTCCGACTGAACTCGG] [+] EMBL CD163667 [CAAGCGTTGGTAGCTAATATATGAGTACACCCGAGATCTTTCAAGGCCCAAACGTTGGCGCGATAGTTGACTTCGCTGGGTGGAATTAAGTGTCCTTTACCATGTCACGTTGTCGAGTAGCTGATATTAAACGTTGTAATGTGATTGGTCTTGCTCTATTTCTGTTAAACCTCGCATTTTTGAGCTAAAGATGCCTGAATAAGTTTTGTAATGACCATTGTTATTCGTAAACGATTGTTCGCTGTCGACAGTAGTACCATATATGTCATTCAGAAGTACAGTAACCTGGGAAGTACAACACATGCAACATCTCCAACAAAACCTTCGACAAGAGTGTCTGACGGCTTTCCAAACGGAGTAGTTACTTGTCGCACTCCTACTTTTTTGAATAGATTAGGGTCATCGAATCCAGAACCCCCAATAATTCCAACCTTAACTTTAGACATTCCGACTGAACTCGG] consensusID : consensus_4636#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 441 fasta sequence [AAACTGATCAAGAACAACGAAATCTCCAGGTACCAAGTCCTCCTGCAGACTACCACAAGCGTTGGTAGCTAATATATGAGTACACCCGA-GATCTTTCAAGGCCCAAACGTTGGCGCGATAGTTGACTTCGCTGGGTGGAATTAAGTGTCCTTTACCATGTCTGGGAAGTACAACATATGCAACATCTCCAACAAAACCTTCGACAAGAGTGTCTGACGGCTTTCCAAACGGAGTAGTTACTTGTCGCACTCCTACTTTTTTGAATAGATTAGGGTCATCGAATCCAGAACCCCCAATAATTCCAACCTTAACTTTAGACATTCCGACTGAACTCGGCTAGGTTAGATAATTAACGACACAATTACAGCTCGCTATTTATAACCAGTGACGCTGTGGGCGTGTAGGGCTAGTTTTGTTTCTAAGGTTGAATATCGCGGGAAG] [-] EMBL CD199584 [AAACTGATCAAGAACAACGAAATCTCCAGGTACCAAGTCCTCCTGCAGACTACCACAAGCGTTGGTAGCTAATATATGAGTACACCCGA GATCTTTCAAGGCCCAAACGTTGGCGCGATAGTTGACTTCGCTGGGTGGAATTAAGTGTCCTTTACCATGTCTGGGAAGTACAACATATGCAACATCTCCAACAAAACCTTCGACAAGAGTGTCTGACGGCTTTCCAAACGGAGTAGTTACTTGTCGCACTCCTACTTTTTTGAATAGATTAGGGTCATCGAATCCAGAACCCCCAATAATTCCAACCTTAACTTTAGACATTCCGACTGAACTCGGCTAGGTTAGATAATTAACGACACAATTACAGCTCGCTATTTATAA ] [+] EMBL CD163679 [ CAAGCGTTGGTAGCTAATATATGAGTACACCCGACGATCTTTCAAGGCCCAAACGTTGGCGCGATAGTTGACTTCGCTGGGTGGAATTAAGTGTCCTTTACCATGTCTGGGAAGTACAACACATGCAACATCTCCAACAAAACCTTCGACAAGAGTGTCTGACGGCTTTCCAAACGGAGTAGTTACTTGTCGCACTCCTACTTTTTTGAATAGATTAGGGTCATCGAATCCAGAACCCCCAATAATTCCAACCTCAACTTTAGACATTCCGACTGAACTCGGCTAGGTTAGATAATTAACGACACAATTACAGCTCGCTATTTATAACCAGTGACGCTGTGGGCGTGTAGGGCTAGTTTTGTTTCTAAGGTTGAATATCGCGGGAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4636#0 CAAGCGTTGGTAGCTAATATATGAGTACACCCGAGATCTTTCAAGGCCCAAACGTTGGCG 60 consensus_4636#1 ------------------------------------------------------------ consensus_4636#0 CGATAGTTGACTTCGCTGGGTGGAATTAAGTGTCCTTTACCATGTCACGTTGTCGAGTAG 120 consensus_4636#1 ---------------------------------------------------------AAA 3 * consensus_4636#0 CTGATATTAAACGTTGTAATGTGATTGGTCTTGCTCTATTTCTGTTAAACCTCGCATTTT 180 consensus_4636#1 CTGATCAAGAACAACGAAATCTCCAGGTACCAAGTCC--TCCTGCAGACTACCACAAGCG 61 ***** *** * *** * * * ** * *** * * ** consensus_4636#0 TGAGCTAAAGATGCCTGAATAAGTTTTGTAATGACCATTGTT-ATTCGTAAACG--ATTG 237 consensus_4636#1 TTGGTAGCTAATATATGAGTACACCCGAGATCTTTCAAGGCCCAAACGTTGGCGCGATAG 121 * * ** *** ** * ** * * *** ** ** * consensus_4636#0 TTCGCTGTCGACAGTAGTACCATATATGTCATTCAGAAGTACAGTAACCTGGGAAGTACA 297 consensus_4636#1 TTGACTTCGCTGGGTGGAAT--TAAGTGTCCTT------TACCATG-TCTGGGAAGTACA 172 ** ** ** * * ** **** ** *** * ************ consensus_4636#0 ACACATGCAACATCTCCAACAAAACCTTCGACAAGAGTGTCTGACGGCTTTCCAAACGGA 357 consensus_4636#1 ACATATGCAACATCTCCAACAAAACCTTCGACAAGAGTGTCTGACGGCTTTCCAAACGGA 232 *** ******************************************************** consensus_4636#0 GTAGTTACTTGTCGCACTCCTACTTTTTTGAATAGATTAGGGTCATCGAATCCAGAACCC 417 consensus_4636#1 GTAGTTACTTGTCGCACTCCTACTTTTTTGAATAGATTAGGGTCATCGAATCCAGAACCC 292 ************************************************************ consensus_4636#0 CCAATAATTCCAACCTTAACTTTAGACATTCCGACTGAACTCGG---------------- 461 consensus_4636#1 CCAATAATTCCAACCTTAACTTTAGACATTCCGACTGAACTCGGCTAGGTTAGATAATTA 352 ******************************************** consensus_4636#0 ------------------------------------------------------------ consensus_4636#1 ACGACACAATTACAGCTCGCTATTTATAACCAGTGACGCTGTGGGCGTGTAGGGCTAGTT 412 consensus_4636#0 ----------------------------- consensus_4636#1 TTGTTTCTAAGGTTGAATATCGCGGGAAG 441 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||