These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4640#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 384 fasta sequence [TATGACTGTCCGTTGGATGCTGCACTAACTTATCCAACGTTGGTAAAGTACATTGTGGCTTTTTTGATTTGTTATTAACAGGTCCTGGAAAGTAACGTGCCTTCGACTTATAAAATGACGCAGCCGACGTTATACTACTAAGGTTCCCATTTGAGGGGATAAGCTGATTAGACGGTGGAATAAGAGGTCTTGTTTTGGTTGTACAATTTATTAGTTCGTCGATGTCTAAAGAATCTCGTTTCTGGGTACTGAGAATATTATTATCGGGATGATCAGTTAATCGAGAACCATATCGTTGTTTTACTTCTTTTGTTAAATTACATCATTTCTATGTGTTATAGAAGAAAACCCAGAGCTTTAAGATATCTTATAATCAAAGGAATA] [+] EMBL CD164178 [TATGACTGTCCGTTGGATGCTGCACTAACTTATCCAACGTTGGTAAAGTACATTGTGGCTTTTTTGATTTGTTATTAACAGGTCCTGGAAAGTAACGTGCCTTCGACTTATAAAATGACGCAGCCG ] [+] EMBL CD068358 [ ATGACTGTCCG TGGATGCTGCACTAACTTATCCAACGTTGGTAAAGTACATTGTGGCTTTTTTGATTTGTTATTAACAGGTCCTGGAAAGTAACGTGCCTTCGACTTATAAAATGACGCAGCCGACGTTATACTACTAAGGTTCCCATTTGAGGGGATAAGCTGATTAGACGGTGGAATAAGAGGTCTTGTTTTGGTTGTACAATTTATTAGTTCGTCGATGTCTAAAGAATCTCGTTTCTGGGTACTGAGAATATTATTATCGGGATGATCAGTTAATCGAGAACCATATCGTTGTTTTACTTCTTTTGTTAAATTACATCATTTCTATGTGTTATAGAAGAAAACCCAGAGCTTTAAGATATCTTATAATCAAAGGAATA] consensusID : consensus_4640#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 134 fasta sequence [TTTATTAGTTCGTCGATATCTAAAGAATCTCGTTTCTGGGTACTGAGAATATTATTATCGGGATGATCAGTTAATCGAGAACCATATCGTTGTTTTACTTCTTTTGTTAAATTACAACCATTTAAAATCGGTGG] [-] EMBL CD133752 [TTTATTAGTTCGTCGATATCTAAAGAATCTCGTTTCTGGGTACTGAGAATATTATTATCGGGATGATCAGTTAATCGAGAACCATATCGTTGTTTTACTTCTTTTGTTAAATTACAACCATTTAAAATCGGTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4640#0 TATGACTGTCCGTTGGATGCTGCACTAACTTATCCAACGTTGGTAAAGTACATTGTGGCT 60 consensus_4640#1 ------------------------------------------------------------ consensus_4640#0 TTTTTGATTTGTTATTAACAGGTCCTGGAAAGTAACGTGCCTTCGACTTATAAAATGACG 120 consensus_4640#1 ------------------------------------------------------------ consensus_4640#0 CAGCCGACGTTATACTACTAAGGTTCCCATTTGAGGGGATAAGCTGATTAGACGGTGGAA 180 consensus_4640#1 ------------------------------------------------------------ consensus_4640#0 TAAGAGGTCTTGTTTTGGTTGTACAATTTATTAGTTCGTCGATGTCTAAAGAATCTCGTT 240 consensus_4640#1 --------------------------TTTATTAGTTCGTCGATATCTAAAGAATCTCGTT 34 ***************** **************** consensus_4640#0 TCTGGGTACTGAGAATATTATTATCGGGATGATCAGTTAATCGAGAACCATATCGTTGTT 300 consensus_4640#1 TCTGGGTACTGAGAATATTATTATCGGGATGATCAGTTAATCGAGAACCATATCGTTGTT 94 ************************************************************ consensus_4640#0 TTACTTCTTTTGTTAAATTACATCATTTCTATGTGTTATAGAAGAAAACCCAGAGCTTTA 360 consensus_4640#1 TTACTTCTTTTGTTAAATTACAACCATTTAAAAT-CGGTGG------------------- 134 ********************** * ** * * * * consensus_4640#0 AGATATCTTATAATCAAAGGAATA 384 consensus_4640#1 ------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||