These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4657#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 424 fasta sequence [GTATTATGTGATGGGTTGATGGGTTGAGAGACGGGACAACGTTTGGGAATATACTTTGTGCAGGAGCAAGTCGTTTCAACTTTTTGGTATCAGGATTCGCAGGACTTCCCTCCTGACCTGGACGCTGTTTACACGAAGATAGTGCTAAGCTGATACCTTCTGAAACACGATTTATCAAGTGAGGCACCGGAACAGATGGATCTAATACATCAGATCCACTAAGCTGTGAATAGCTGGAATTTTTCCTATTTATTATCGTCTCCGTAACAGCACTTGTGACACCAAATGATTCAGGTAGGAACTGACTAAATTCTTGAAGTAGATCTTCTTGACCGCCAAAAAGCTTGGCGACGTCCTGATAAACCTGTCATTCTGCCTGTTAGCGGCACATGGGGTCCGAATGCCGTTGTTCCTTTTGATACCA] [+] EMBL CD068450 [GTATTATGTGATGGGTTGATGGGTTGAGAGACGGGACAACGTTTGGGAATATACTTTGTGCAGGAGCAAGTCGTTTCAACTTTTTGGTATCAGGATTCGCAGGACTTCCCTCCTGACCTGGACGCTGTTTACACGAAGATAGTGCTAAGCTGATACCTTCTGAAACACGATTTATCAAGTGAGGCACCGGAACAGATGGATCTAATACATCAGATCCACTAAGCTGTGAATAGCTGGAATTTTTCCTATTTATTATCGTCTCCGTAACAGCACTTGTGACACCAAATGATTCAGGTAGGAACTGACTAAATTCTTGAAGTAGATCTTCTTGACCGCCAAAAAGCTTGGCGACGTCCTGATAAACCTGTCATTCTGCCTGTTAGCGGC ] [-] EMBL CD182126 [ CGAAGATAGTGCTAAGCTGATACCTTCTGAAACACGATTTATCAAGTGAGGCACCGGAACAGATGGATCTAATACATCAGATCCACTAAGCTGTGAATAGCTGGAATTTTTCCTATTTATTATCGTCTCTGTAACAGCACTTGTGACACCAAATGATTCAGGTAGGAACTGACTAAATTCTTGAAGTAGATCTTCTTGACCGCCAAAAAGCTTGGCGACGTCCTGATAAACCTGTAATTCTGCCTGTTTGCGGCACATGGGGTCCGAATGCCGTTGTTCCTTTTGATACCA] consensusID : consensus_4657#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 365 fasta sequence [CGATTCCCAACTGGGCTGTCTGCATCTAAAGCATCTCGAATCTTTTGTAATAGTGAAATGCCAATCCCCGTAGTCAGTTGGATTGCATCAACAACACTTACATCTCGAACTGACGAACGTGACTTTTTAGGTGGGTTGAGAGACGGGACAACGTTTGGGAATATACTTTGTGCAGGAGCAAGTCGTTTCAACTTTTTAGTATCAGGATTCGCAGGACTTCCCTCCTGACCTGGACGCTGTTTACACGAAGATAGTGCTAAGCTGATACCTTCTGAAACACGATTTATCAAGTGAGGCACCGGAACAGATGGATCTAATACATCAGATCCACTAAGCTGTGAATAGCTGGAATTTTTCCTATTTAT] [+] EMBL CD160223 [CGATTCCCAACTGGGCTGTCTGCATCTAAAGCATCTCGAATCTTTTGTAATAGTGAAATGCCAATCCCCGTAGTCAGTTGGATTGCATCAACAACACTTACATCTCGAACTGACGAACGTGACTTTTTAGGTGGGTTGAGAGACGGGACAACGTTTGGGAATATACTTTGTGCAGGAGCAAGTCGTTTCAACTTTTTAGTATCAGGATTCGCAGGACTTCCCTCCTGACCTGGACGCTGTTTACACGAAGATAGTGCTAAGCTGATACCTTCTGAAACACGATTTATCAAGTGAGGCACCGGAACAGATGGATCTAATACATCAGATCCACTAAGCTGTGAATAGCTGGAATTTTTCCTATTTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4657#0 ------------------------------------------------------------ consensus_4657#1 CGATTCCCAACTGGGCTGTCTGCATCTAAAGCATCTCGAATCTTTTGTAATAGTGAAATG 60 consensus_4657#0 ---------------------------------------------------GTATTATGT 9 consensus_4657#1 CCAATCCCCGTAGTCAGTTGGATTGCATCAACAACACTTACATCTCGAACTGACGAACGT 120 * * ** consensus_4657#0 GATGGGTT-GATGGGTTGAGAGACGGGACAACGTTTGGGAATATACTTTGTGCAGGAGCA 68 consensus_4657#1 GACTTTTTAGGTGGGTTGAGAGACGGGACAACGTTTGGGAATATACTTTGTGCAGGAGCA 180 ** ** * ************************************************* consensus_4657#0 AGTCGTTTCAACTTTTTGGTATCAGGATTCGCAGGACTTCCCTCCTGACCTGGACGCTGT 128 consensus_4657#1 AGTCGTTTCAACTTTTTAGTATCAGGATTCGCAGGACTTCCCTCCTGACCTGGACGCTGT 240 ***************** ****************************************** consensus_4657#0 TTACACGAAGATAGTGCTAAGCTGATACCTTCTGAAACACGATTTATCAAGTGAGGCACC 188 consensus_4657#1 TTACACGAAGATAGTGCTAAGCTGATACCTTCTGAAACACGATTTATCAAGTGAGGCACC 300 ************************************************************ consensus_4657#0 GGAACAGATGGATCTAATACATCAGATCCACTAAGCTGTGAATAGCTGGAATTTTTCCTA 248 consensus_4657#1 GGAACAGATGGATCTAATACATCAGATCCACTAAGCTGTGAATAGCTGGAATTTTTCCTA 360 ************************************************************ consensus_4657#0 TTTATTATCGTCTCCGTAACAGCACTTGTGACACCAAATGATTCAGGTAGGAACTGACTA 308 consensus_4657#1 TTTAT------------------------------------------------------- 365 ***** consensus_4657#0 AATTCTTGAAGTAGATCTTCTTGACCGCCAAAAAGCTTGGCGACGTCCTGATAAACCTGT 368 consensus_4657#1 ------------------------------------------------------------ consensus_4657#0 CATTCTGCCTGTTAGCGGCACATGGGGTCCGAATGCCGTTGTTCCTTTTGATACCA 424 consensus_4657#1 -------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||