These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4658#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 584 fasta sequence [GACCTCGGTCACCCTGGCCAAGGGTGGNAAATCAGGACAGGACGTATTGAAGCAAGAAATGAATTAAGAAAAAATAACAAATGATACGAAAGACATCGAGATGCTACACCTGAAGTAAACAAATATATGAAAAAGGATGACAAAAGAAATGATGCAAAGGCGCTTGAGAATGTAACAACGAAACAAGTAAGAAATAACTCTACATCTTTCAAGGTGAGGGTGAATAAAGTTTGCAAAATATACAAGATTACAGAATCTGGATTTGTGATGTAGTCTTTTTTATGATGAAAGAAGACAAAGCAAACGGCACGAATGAATTTTCCAACACCTAACATTCCAGAAAATAAATAAGTTTGTCTCGTAAAACGTTAACAAGGATCAGTCAGCCGGGGGAATGGTTTTTCACAATTTGGAAAGCTTGCATAGTAGGAAAAACAGACCATAGAAAGTAAGAAAGGCAAATTGAAGGAAGACAGTGAACGCAGAAAAAGCATAAGTTCAGTATTTTTAATGACTTCAGAAATTAACAGTTCAAGAAACTATTATTTGCTGCTCCTAGAATATTTCAAAACATAATCACTTAA] [+] EMBL CD167841 [GACCTCGGTCACCCTGGCCAAGGGTGGNAAATCAGGACAGGACGTATTGAAGCAAGAAATGAATTAAGAAAAAATAACAAATGATACGAAAGACATCGAGATGCTACACCTGAAGTAAACAAATATATGAAAAAGGATGACAAAAGAAATGATGCAAAGGCGCTTGAGAATGTAACAACGAAACAAGTAAGAAATAACTCTACATCTTTCAAGGTGAGGGTGAATAAAGTTTGCAAAATATACAAGATTACAGAATCTGGATTTGTGATGTAGTCTTTTTTATGATGAAAGAAGACAAAGCAAACGGCACGAATGAATTTTCCAACACCTAACATTCCAGAAAATAAATAAGTTTGTCTCGTAAAACGTTAACAAGGATCAGTCAGCCGGGGGAATGGTTTTTCACAATTTGGAAAGCTTGCATAGTAGGAAAAACAGACCATAGAAAGTAAGAAAGGCAAATTGAAGGAAGACAGTGAACGCAGAAAAAGCATAAGTTCAGTATTTTTAATGACTTCAGAAATTAACAGTTCAAGAAACTATTATTTGCTGCTCCTAGAATATTTCAAAACATAATCACTTAA] [+] EMBL CD181920 [ TAAAGTTTGCAAAATATACAAGATTACAGAATCTGGATTTGTGATGTAGTCTTTTTTATGATGAAAGAAGACAAAGCAAACGGCACGAATGAATTTTCCAACACCTAACATTCCAGAAAATAAATAAGTTTGTCTCGTAAAACGTTAACAAGGATCAGTCAGCCGGGGGAATGGTTTTTCACAATTTGGAAAGCTTGCATAGTAGGAAAAACAGACCATAGAAAGTAAGAAAGGCAAATTGAAGGAAGACAGTGAACGCAGAANAAGCATAAGTTCAGTATTTTTAATG ] consensusID : consensus_4658#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 454 fasta sequence [GCAAGGAAATGTGGTGCATAGACTACACTGCAATCATATCCAGTAAATTATCAATCAAACAGGACGTATTGAAGCAAGAAATGAATTAAGAAAAAATAACAAATGATACGAAAAACATCGAGATGCTACACCTGAAGTAAACAAATATATGAAAAAGGATGACAAAAGAAATGATGCAAAGGCGCTTGAGAATGTAACAACGAAACAAGTAAGAAATAACTCTACATCTTTCAAGGTGAGGGTGAATAAAGTTTGCAAAATATACAAGATTACAGAATCTGGATTTGTGATGTAGTCTTTTTTATGATGAAAGAAGACAAAGCAAACGGCACGAATGAATTTTCCAACACCTAACATTCCAGAAAATAAATAAGTTTGTCTCGTAAAACGTTAACAAGGATCAGTCAGCCGGGGGAATGGTTTTTCACAATTTGGAAAGCTTGCATAGTAGGAA] [-] EMBL CD200474 [GCAAGGAAATGTGGTGCATAGACTACACTGCAATCATATCCAGTAAATTATCAATCAAACAGGACGTATTGAAGCAAGAAATGAATTAAGAAAAAATAACAAATGATACGAAAAACATCGAGATGCTACACCTGAAGTAAACAAATATATGAAAAAGGATGACAAAAGAAATGATGCAAAGGCGCTTGAGAATGTAACAACGAAACAAGTAAGAAATAACTCTACATCTTTCAAGGTGAGGGTGAATAAAGTTTGCAAAATATACAAGATTACAGAATCTGGATTTGTGATGTAGTCTTTTTTATGATGAAAGAAGACAAAGCAAACGGCACGAATGAATTTTCCAACACCTAACATTCCAGAAAATAAATAAGTTTGTCTCGTAAAACGTTAACAAGGATCAGTCAGCCGGGGGAATGGTTTTTCACAATTTGGAAAGCTTGCATAGTAGGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4658#0 --------------------GACCTCG--GTCACCCTGGCCAA-GGGTGGNAAATCAGGA 37 consensus_4658#1 GCAAGGAAATGTGGTGCATAGACTACACTGCAATCATATCCAGTAAATTATCAATCAA-A 59 *** * * * * * *** * ***** * consensus_4658#0 CAGGACGTATTGAAGCAAGAAATGAATTAAGAAAAAATAACAAATGATACGAAAGACATC 97 consensus_4658#1 CAGGACGTATTGAAGCAAGAAATGAATTAAGAAAAAATAACAAATGATACGAAAAACATC 119 ****************************************************** ***** consensus_4658#0 GAGATGCTACACCTGAAGTAAACAAATATATGAAAAAGGATGACAAAAGAAATGATGCAA 157 consensus_4658#1 GAGATGCTACACCTGAAGTAAACAAATATATGAAAAAGGATGACAAAAGAAATGATGCAA 179 ************************************************************ consensus_4658#0 AGGCGCTTGAGAATGTAACAACGAAACAAGTAAGAAATAACTCTACATCTTTCAAGGTGA 217 consensus_4658#1 AGGCGCTTGAGAATGTAACAACGAAACAAGTAAGAAATAACTCTACATCTTTCAAGGTGA 239 ************************************************************ consensus_4658#0 GGGTGAATAAAGTTTGCAAAATATACAAGATTACAGAATCTGGATTTGTGATGTAGTCTT 277 consensus_4658#1 GGGTGAATAAAGTTTGCAAAATATACAAGATTACAGAATCTGGATTTGTGATGTAGTCTT 299 ************************************************************ consensus_4658#0 TTTTATGATGAAAGAAGACAAAGCAAACGGCACGAATGAATTTTCCAACACCTAACATTC 337 consensus_4658#1 TTTTATGATGAAAGAAGACAAAGCAAACGGCACGAATGAATTTTCCAACACCTAACATTC 359 ************************************************************ consensus_4658#0 CAGAAAATAAATAAGTTTGTCTCGTAAAACGTTAACAAGGATCAGTCAGCCGGGGGAATG 397 consensus_4658#1 CAGAAAATAAATAAGTTTGTCTCGTAAAACGTTAACAAGGATCAGTCAGCCGGGGGAATG 419 ************************************************************ consensus_4658#0 GTTTTTCACAATTTGGAAAGCTTGCATAGTAGGAAAAACAGACCATAGAAAGTAAGAAAG 457 consensus_4658#1 GTTTTTCACAATTTGGAAAGCTTGCATAGTAGGAA------------------------- 454 *********************************** consensus_4658#0 GCAAATTGAAGGAAGACAGTGAACGCAGAAAAAGCATAAGTTCAGTATTTTTAATGACTT 517 consensus_4658#1 ------------------------------------------------------------ consensus_4658#0 CAGAAATTAACAGTTCAAGAAACTATTATTTGCTGCTCCTAGAATATTTCAAAACATAAT 577 consensus_4658#1 ------------------------------------------------------------ consensus_4658#0 CACTTAA 584 consensus_4658#1 ------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||