cluster # 4684

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Schistosoma mansoni
cluster # 4684 cluster # 4684 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4684#0 length = 280 sequences # 2

consensus_4684#1 length = 254 sequences # 1

consensusID : consensus_4684#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 280
fasta sequence

                              [ACCTAGTGGACCATTTGATGTGGCACAATATTCACAAAATTATTATTTTGTACCAAATCATATTAATCAGTCAATGCGAATATCAGCTTCACCACCAATACGTCTTGGTTCGCCAATGATACATACATCAATTACTAATAATACAAATAATAATAATAATGATAACAATAATAATAATAATCCTACTAATGAAGGAAATGGTCCACAGTTAAATACATCTAATCTCCCACCCTCCAACAATAATACAAAATTAAAAGGCATAAAGCTTTCTCCCACTAGG]

[+] EMBL CD084377             [ACCTAGTGGACCATTTGATGTGGCACAATATTCACAAAATTATTATTTTGTACCAAATCATATTAATCAGTCAATGCGAATATCAGCTTCACCACCAATACGTCTTGGTTCGCCAATGATACATACATCAATTACTAATAATACAAATAATAATAATAATGATAACAATAATAATAATAATCCTACTAATGAAGGAAATGGTCCACAGTTAAATACATCTAATCTCCCACCCTCCAACAATAATACAAAATTAAAAGGCATAAAGCTTTCTCCCACTAGG]
[+] EMBL CD186275             [                  TGTGGCACAATATTCACAAAATTATTATTTTGTACCAAATCATATTAATCAGTCAATGCGAATATCAGCTTCACCACCAATACGTCTTGGTTCGCCAATGATACATACATCAATTACTAATAATACAAATAATAATAATAATGATAACAATAATAATAATAATCCTACTAATGAAGGAAATGGTCCACAGTTAAATACATCTAATCTCCCACCCTCCAACAATAATACAAAATTAAAAGGCATA                  ]




>consensus_4684#0
ACCTAGTGGACCATTTGATGTGGCACAATATTCACAAAATTATTATTTTGTACCAAATCA
TATTAATCAGTCAATGCGAATATCAGCTTCACCACCAATACGTCTTGGTTCGCCAATGAT
ACATACATCAATTACTAATAATACAAATAATAATAATAATGATAACAATAATAATAATAA
TCCTACTAATGAAGGAAATGGTCCACAGTTAAATACATCTAATCTCCCACCCTCCAACAA
TAATACAAAATTAAAAGGCATAAAGCTTTCTCCCACTAGG

consensusID : consensus_4684#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 254
fasta sequence

                              [GACCATTTGATGTGGCACAATATTCACAAAATTATTATTTTGTACCAAATCATATTAATCAGTCAATGCGAATATCAGCTTCACCACCAATACGTCTTGGTTCGCCAATGATACATACATCATTTACTAATAATACAGATACAAATAATAGTCCTACTCACTATAATAATAGTAATGACTATAACATTCGATATTCTATGCAACAGCAACCTATGAGTCCACAACCGATAGCTGTCGGTTCAGGAGGACATCAA]

[+] EMBL CD170007             [GACCATTTGATGTGGCACAATATTCACAAAATTATTATTTTGTACCAAATCATATTAATCAGTCAATGCGAATATCAGCTTCACCACCAATACGTCTTGGTTCGCCAATGATACATACATCATTTACTAATAATACAGATACAAATAATAGTCCTACTCACTATAATAATAGTAATGACTATAACATTCGATATTCTATGCAACAGCAACCTATGAGTCCACAACCGATAGCTGTCGGTTCAGGAGGACATCAA]




>consensus_4684#1
GACCATTTGATGTGGCACAATATTCACAAAATTATTATTTTGTACCAAATCATATTAATC
AGTCAATGCGAATATCAGCTTCACCACCAATACGTCTTGGTTCGCCAATGATACATACAT
CATTTACTAATAATACAGATACAAATAATAGTCCTACTCACTATAATAATAGTAATGACT
ATAACATTCGATATTCTATGCAACAGCAACCTATGAGTCCACAACCGATAGCTGTCGGTT
CAGGAGGACATCAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4684#0      ACCTAGTGGACCATTTGATGTGGCACAATATTCACAAAATTATTATTTTGTACCAAATCA 60
consensus_4684#1      --------GACCATTTGATGTGGCACAATATTCACAAAATTATTATTTTGTACCAAATCA 52
                              ****************************************************

consensus_4684#0      TATTAATCAGTCAATGCGAATATCAGCTTCACCACCAATACGTCTTGGTTCGCCAATGAT 120
consensus_4684#1      TATTAATCAGTCAATGCGAATATCAGCTTCACCACCAATACGTCTTGGTTCGCCAATGAT 112
                      ************************************************************

consensus_4684#0      ACATACATCAATTACTAATAATACAAATAATAATAATAATGATA---ACAATAATAATAA 177
consensus_4684#1      ACATACATCATTTACTAATAATACAGATACAAATAATAGTCCTACTCACTATAATAATAG 172
                      ********** ************** ***  ******* *  **   ** ********* 

consensus_4684#0      TAATCCTACTAATGAAGGAAATGGTCCACAGTTAAATACATCTAATCTCCCACCCTCCAA 237
consensus_4684#1      TAATGACTATAACATTCGATATTCTATGCAAC-AGCAACCTATGAGTCCACAACCGATAG 231
                      ****     ***     ** **  *   **   *   ** * * *   * ** **   * 

consensus_4684#0      CAATAATACAAAATTAAAAGGCATAAAGCTTTCTCCCACTAGG 280
consensus_4684#1      CTGT----CGGTTCAGGAGGACATCAA---------------- 254
                      *  *    *        * * *** **