These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4694#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 469 fasta sequence [ACCTGTTAGTGTTACTGTAATAGATGCATCAATTGAATTGTTTGGTCGTTTATTTGCTTGTGTTTCTATTCGTCATCGTACACAAATGTTAGAACATTTTACTGAATGTATTCGTCTTACAAAATCAATACGTCAAGAAGCTGTACAAATTAATGTTTTCGCTGCGTTATTAAGTGCATTACGATATTTAGCTGAAACAAAATCTACATTCGGTGATGATCCAGCGTTAAGAAAAGCTGCTACAAACCTAATTTTTTCTAGATTATGCGGAGACCATTATGCTCAGAATTCTTCGTTGAATGGATCACAAAGAAGTATTGTTTATGATGCTACTCTGACTAGTCAAAGTGTTCTACTACGTTGTGTGGCTGGTGAATGTCTTGGAAGGCTTGCGCAAGTTGTTGGCGAATCTGGATTTCTAGCAGAATTAGCTCAGCAAATTTTTGAACGTCTACGTGCTATTCGCAAT] [+] EMBL CD163333 [ACCTGTTAGTGTTACTGTAATAGATGCATCAATTGAATTGTTTGGTCGTTTATTTGCTTGTGTTTCTATTCGTCATCGTACACAAATGTTAGAACATTTTACTGAATGTATTCGTCTTACAAAATCAATACGTCAAGAAGCTGTACAAATTAATGTTTTCGCTGCGTTATTAAGTGCATTACGATATTTAGCTGAAACAAAATCTACATTCGGTGATGATCCAGCGTTAAGAAAAGCTGCTACAAACCTAATTTTTTCTAGATTATGCGGAGACCATTATGCTCAGAATTCTTCGTTGAATGGATCACAAAGAAGTATTGTTTATGATGCTACTCTGACTAGTCAAAGTGTTCTACTACGTTGTGTGGCTGGTGAATGTCTTGGAAGGCTTGCGCAAGTTGTTGGCGAATCTGGATTTCTAGCAGAATTAGCTCAGCAAATTTTTGAACGTCTACGTGCTATTCGCAAT] [+] EMBL CD163106 [ACCTGTTAGTGTTACTGTAATAGATGCATCAATTGAATTGTTTGGTCGTTTATTTGCTTGTGTTTCTATTCGTCATCGTACACAAATGTTAGAACATTTTACTGAATGTATTCGTCTTACAAAATCAATACGTCAAGAAGCTGTACAGATTAATGTTTTCGCTGCGTTATTAAGTGCATTACGATATTTAGCTGAAACAAAATCTACATTCGGTGATGATCCAGCGTTAAGAAAAGCTGCTACAAACCTAATTTTTTCTAGATTATGCGGAGACCATTATGCTCAGAATTCTTCGTCGAATGGATCACAAAGAAGTATTG TTATGATGCTACTTTGACTAGTCAAAGTGTTCTACTACGTTGTGTGGCTGGTGAATGTCTTGGAAGGCTTGCACAAGTTGTTGGCGAATCTGGATTTCTAGCAGAATT ] consensusID : consensus_4694#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 434 fasta sequence [CATAATCTTGGAAATTTTACTAATTCCACATTATCTTGTGCATTACAATTAACTGGACCTATACCTGTTAGTGTTACTGTAATAGATGCATCAATTGAATTGTTTGGTCGTTTATTTGCTTGTGTTTCTATTCGTCATCGTACACAAATGTTAGAACATTTTACTGAATGTATTCGTCGTACAAAATCAATACGTCAAGAAGCTGTACAAATTAATGTTTTCGCTGCGTTATTAAGTGCATTACGATATTTAGCTGAAACAAAATCTACATTCGGTGATGATCCAGCGTTAAGAAAAGCTGCTACAAACCTAATTATTGCTACTCTGACTAGTCAAAGTGTTCTACTACGTTGTGTGGCTGGTGAATGTCTTGGAAGGCTTGCACAAGATGTTGGCGAATCTGGATTTCTAGCAGAATTAGCTCACCAAATTTT] [-] EMBL CD191929 [CATAATCTTGGAAATTTTACTAATTCCACATTATCTTGTGCATTACAATTAACTGGACCTATACCTGTTAGTGTTACTGTAATAGATGCATCAATTGAATTGTTTGGTCGTTTATTTGCTTGTGTTTCTATTCGTCATCGTACACAAATGTTAGAACATTTTACTGAATGTATTCGTCGTACAAAATCAATACGTCAAGAAGCTGTACAAATTAATGTTTTCGCTGCGTTATTAAGTGCATTACGATATTTAGCTGAAACAAAATCTACATTCGGTGATGATCCAGCGTTAAGAAAAGCTGCTACAAACCTAATTATTGCTACTCTGACTAGTCAAAGTGTTCTACTACGTTGTGTGGCTGGTGAATGTCTTGGAAGGCTTGCACAAGATGTTGGCGAATCTGGATTTCTAGCAGAATTAGCTCACCAAATTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4694#0 ------------------------------------------------------------ consensus_4694#1 CATAATCTTGGAAATTTTACTAATTCCACATTATCTTGTGCATTACAATTAACTGGACCT 60 consensus_4694#0 --ACCTGTTAGTGTTACTGTAATAGATGCATCAATTGAATTGTTTGGTCGTTTATTTGCT 58 consensus_4694#1 ATACCTGTTAGTGTTACTGTAATAGATGCATCAATTGAATTGTTTGGTCGTTTATTTGCT 120 ********************************************************** consensus_4694#0 TGTGTTTCTATTCGTCATCGTACACAAATGTTAGAACATTTTACTGAATGTATTCGTCTT 118 consensus_4694#1 TGTGTTTCTATTCGTCATCGTACACAAATGTTAGAACATTTTACTGAATGTATTCGTCGT 180 ********************************************************** * consensus_4694#0 ACAAAATCAATACGTCAAGAAGCTGTACAAATTAATGTTTTCGCTGCGTTATTAAGTGCA 178 consensus_4694#1 ACAAAATCAATACGTCAAGAAGCTGTACAAATTAATGTTTTCGCTGCGTTATTAAGTGCA 240 ************************************************************ consensus_4694#0 TTACGATATTTAGCTGAAACAAAATCTACATTCGGTGATGATCCAGCGTTAAGAAAAGCT 238 consensus_4694#1 TTACGATATTTAGCTGAAACAAAATCTACATTCGGTGATGATCCAGCGTTAAGAAAAGCT 300 ************************************************************ consensus_4694#0 GCTACAAACCTAATTTTTTCTAGATTATGCGGAGACCATTATGCTCAGAATTCTTCGTTG 298 consensus_4694#1 GCTACAAACCTAATTATT------------------------------------------ 318 *************** ** consensus_4694#0 AATGGATCACAAAGAAGTATTGTTTATGATGCTACTCTGACTAGTCAAAGTGTTCTACTA 358 consensus_4694#1 ------------------------------GCTACTCTGACTAGTCAAAGTGTTCTACTA 348 ****************************** consensus_4694#0 CGTTGTGTGGCTGGTGAATGTCTTGGAAGGCTTGCGCAAGTTGTTGGCGAATCTGGATTT 418 consensus_4694#1 CGTTGTGTGGCTGGTGAATGTCTTGGAAGGCTTGCACAAGATGTTGGCGAATCTGGATTT 408 *********************************** **** ******************* consensus_4694#0 CTAGCAGAATTAGCTCAGCAAATTTTTGAACGTCTACGTGCTATTCGCAAT 469 consensus_4694#1 CTAGCAGAATTAGCTCACCAAATTTT------------------------- 434 ***************** ******** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||