cluster # 4702

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Schistosoma mansoni
cluster # 4702 cluster # 4702 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4702#0 length = 384 sequences # 1

consensus_4702#1 length = 361 sequences # 2

consensusID : consensus_4702#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 384
fasta sequence

                              [CGTTACACTTGGCCAGCGGTTGCTCTACATGCTCATCTCACTGAACACAATTTATTTCAACTATCATACTTCAGGAATTGTCATTCATTAGTTGTCAAGTCTGTTGTTATAATCTTCTATTTCATCGTTTAGATTATGAAACAAAAACATTATCTTGTCCCATCATTTTTGGCCTCAAAGGGATTGGTTAAACTTCACATCGACTCCTTCAATCATTTTATTCAAACAGAAATAAAAAACGTTGTCCGAGCAAACAGTCGTGTCAGTGTTCCAGAAGCCAATTGGTGGTTAGAGTATAATGACATATATATCAAACCTCCAACAGTAAATGATGGAGGGGTTGTCGCCAGCCGTGTTACTCCTCATGACTGCAGACTCCGTGAT]

[+] EMBL CD163036             [CGTTACACTTGGCCAGCGGTTGCTCTACATGCTCATCTCACTGAACACAATTTATTTCAACTATCATACTTCAGGAATTGTCATTCATTAGTTGTCAAGTCTGTTGTTATAATCTTCTATTTCATCGTTTAGATTATGAAACAAAAACATTATCTTGTCCCATCATTTTTGGCCTCAAAGGGATTGGTTAAACTTCACATCGACTCCTTCAATCATTTTATTCAAACAGAAATAAAAAACGTTGTCCGAGCAAACAGTCGTGTCAGTGTTCCAGAAGCCAATTGGTGGTTAGAGTATAATGACATATATATCAAACCTCCAACAGTAAATGATGGAGGGGTTGTCGCCAGCCGTGTTACTCCTCATGACTGCAGACTCCGTGAT]




>consensus_4702#0
CGTTACACTTGGCCAGCGGTTGCTCTACATGCTCATCTCACTGAACACAATTTATTTCAA
CTATCATACTTCAGGAATTGTCATTCATTAGTTGTCAAGTCTGTTGTTATAATCTTCTAT
TTCATCGTTTAGATTATGAAACAAAAACATTATCTTGTCCCATCATTTTTGGCCTCAAAG
GGATTGGTTAAACTTCACATCGACTCCTTCAATCATTTTATTCAAACAGAAATAAAAAAC
GTTGTCCGAGCAAACAGTCGTGTCAGTGTTCCAGAAGCCAATTGGTGGTTAGAGTATAAT
GACATATATATCAAACCTCCAACAGTAAATGATGGAGGGGTTGTCGCCAGCCGTGTTACT
CCTCATGACTGCAGACTCCGTGAT

consensusID : consensus_4702#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 361
fasta sequence

                              [CGTTACACTTGGTATGTAGCACGCTTTTAAGAAAGGCCAGCGGTTGCTCTACATGCTCATCTCACTGAACACAATTTATTTCAACTATCATACTTCAGGAATTGTCATTCATTAGTTGTCAAGTCTGTTGTTATAATCTTCTATTTCATCGTTTAAATTATGAAACAAAAACATTATCTTGTCCCATCATTTTTGGCCTCAAAGGGATTGGTTAAACTTCACATCGACTCCTTCAATCATTTTATTCAAACAGAAATAAAAAACATTGTCCGAGCAAACAGTCGTGTCAGTGTTCCAGAAGCCAATTGGTGGTTAGAGTATAATGACATATATATCAAACCTCCAACAGTAAATGATGGAG]

[+] EMBL CD189601             [CGTTACACTTGGTATGTAGCACGCTTTTAAGAAAGGCCAGCGGTTGCTCTACATGCTCATCTCACTGAACACAATTTATTTCAACTATCATACTTCAGGAATTGTCATTCATTAGTTGTCAAGTCTGTTGTTATAATCTTCTATTTCATCGTTTAAATTATGAAACAAAAACATTATCTTGTCCCATCATTTTTGGCCTCAAAGGGATTGGTTAAACTTCACATCGACTCCTTCAATCATTTTATTCAAACAGAAATAAAAAACATTGTCCGAGCAAACAGTCGTGTCAGTGTTCCAGAAGCCAATTGGTGGTTAGAGTATAATGACATATATATCAAACCTCCAACAGTAAATGATGGA ]
[-] EMBL CD189754             [ GTTACACTTGGTATGTAGCACGCTTTTAAGAAAGGCCAGCGGTTGCTCTACATGCTCATCTCACTGAACACAATTTATTTCAACTATCATACTTCAGGAATTGTCATTCATTAGTTGTCAAGTCTGTTGTTATAATCTTCTATTTCATCGTTTAAATTATGAAACAAAAACATTATCTTGTCCCATCATTTTTGGCCTCAAAGGGATTGGTTAAACTTCACATCGACTCCTTCAATCATTTTATTCAAACAGAAATAAAAAACATTGTCCGAGCAAACAGTCGTGTCAGTGTTCCAGAAGCCAATTGGTGGTTAGAGTATAATGACATATATATCAAACCTCCAACAGTAAATGATGGAG]




>consensus_4702#1
CGTTACACTTGGTATGTAGCACGCTTTTAAGAAAGGCCAGCGGTTGCTCTACATGCTCAT
CTCACTGAACACAATTTATTTCAACTATCATACTTCAGGAATTGTCATTCATTAGTTGTC
AAGTCTGTTGTTATAATCTTCTATTTCATCGTTTAAATTATGAAACAAAAACATTATCTT
GTCCCATCATTTTTGGCCTCAAAGGGATTGGTTAAACTTCACATCGACTCCTTCAATCAT
TTTATTCAAACAGAAATAAAAAACATTGTCCGAGCAAACAGTCGTGTCAGTGTTCCAGAA
GCCAATTGGTGGTTAGAGTATAATGACATATATATCAAACCTCCAACAGTAAATGATGGA
G

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4702#0      ------------------------CGTTACACTTGGCCAGCGGTTGCTCTACATGCTCAT 36
consensus_4702#1      CGTTACACTTGGTATGTAGCACGCTTTTAAGAAAGGCCAGCGGTTGCTCTACATGCTCAT 60
                                                ***     **************************

consensus_4702#0      CTCACTGAACACAATTTATTTCAACTATCATACTTCAGGAATTGTCATTCATTAGTTGTC 96
consensus_4702#1      CTCACTGAACACAATTTATTTCAACTATCATACTTCAGGAATTGTCATTCATTAGTTGTC 120
                      ************************************************************

consensus_4702#0      AAGTCTGTTGTTATAATCTTCTATTTCATCGTTTAGATTATGAAACAAAAACATTATCTT 156
consensus_4702#1      AAGTCTGTTGTTATAATCTTCTATTTCATCGTTTAAATTATGAAACAAAAACATTATCTT 180
                      *********************************** ************************

consensus_4702#0      GTCCCATCATTTTTGGCCTCAAAGGGATTGGTTAAACTTCACATCGACTCCTTCAATCAT 216
consensus_4702#1      GTCCCATCATTTTTGGCCTCAAAGGGATTGGTTAAACTTCACATCGACTCCTTCAATCAT 240
                      ************************************************************

consensus_4702#0      TTTATTCAAACAGAAATAAAAAACGTTGTCCGAGCAAACAGTCGTGTCAGTGTTCCAGAA 276
consensus_4702#1      TTTATTCAAACAGAAATAAAAAACATTGTCCGAGCAAACAGTCGTGTCAGTGTTCCAGAA 300
                      ************************ ***********************************

consensus_4702#0      GCCAATTGGTGGTTAGAGTATAATGACATATATATCAAACCTCCAACAGTAAATGATGGA 336
consensus_4702#1      GCCAATTGGTGGTTAGAGTATAATGACATATATATCAAACCTCCAACAGTAAATGATGGA 360
                      ************************************************************

consensus_4702#0      GGGGTTGTCGCCAGCCGTGTTACTCCTCATGACTGCAGACTCCGTGAT 384
consensus_4702#1      G----------------------------------------------- 361
                      *