cluster # 471

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Schistosoma mansoni
cluster # 471 cluster # 471 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_471#0 length = 506 sequences # 1

consensus_471#1 length = 296 sequences # 1

consensusID : consensus_471#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 506
fasta sequence

                              [CAGAAAGTAGAGTTTCAGTTGGACTAACCAAGTCGGATTCCTTGAACTCACAACGATTATCAGGAGAGTTCAACGATATACCACCGACCTCCAAACGAGAACTAAAATGCCTTACAGGCGGAGGTAAATCAAATTTCAGACGCTTCTTGGGAGAATCAGGCTCACAAATCATGTCATTGTTCACTGACTCACATTCTTTCAGTTTCTCAGTGACCACCTCCAACTCGAACGATTGTGTATCCAGTGCACGCTGCAAATCCTCTCGTAACCCGTCTGATGTGCAACGGTCAGTCGACAAGCCTTCATGTGCATAGTCGATGTCTTGCACCGGTGACGTGGATCGACCAACTGTTTCGCATAGGCGACGTGAGGCCCGTTCGTACTCACTCACTCTGTTCGCCATGTCGGCACGGTCAGCATTCGCCTCAGCATGTGCTGCACGCAATTCTTTCACCTGCTTCAACAAGAAACCAAGTGATCCTCTGACCTCATCCATCTCCATGCAC]

[+] EMBL CD097302             [CAGAAAGTAGAGTTTCAGTTGGACTAACCAAGTCGGATTCCTTGAACTCACAACGATTATCAGGAGAGTTCAACGATATACCACCGACCTCCAAACGAGAACTAAAATGCCTTACAGGCGGAGGTAAATCAAATTTCAGACGCTTCTTGGGAGAATCAGGCTCACAAATCATGTCATTGTTCACTGACTCACATTCTTTCAGTTTCTCAGTGACCACCTCCAACTCGAACGATTGTGTATCCAGTGCACGCTGCAAATCCTCTCGTAACCCGTCTGATGTGCAACGGTCAGTCGACAAGCCTTCATGTGCATAGTCGATGTCTTGCACCGGTGACGTGGATCGACCAACTGTTTCGCATAGGCGACGTGAGGCCCGTTCGTACTCACTCACTCTGTTCGCCATGTCGGCACGGTCAGCATTCGCCTCAGCATGTGCTGCACGCAATTCTTTCACCTGCTTCAACAAGAAACCAAGTGATCCTCTGACCTCATCCATCTCCATGCAC]




>consensus_471#0
CAGAAAGTAGAGTTTCAGTTGGACTAACCAAGTCGGATTCCTTGAACTCACAACGATTAT
CAGGAGAGTTCAACGATATACCACCGACCTCCAAACGAGAACTAAAATGCCTTACAGGCG
GAGGTAAATCAAATTTCAGACGCTTCTTGGGAGAATCAGGCTCACAAATCATGTCATTGT
TCACTGACTCACATTCTTTCAGTTTCTCAGTGACCACCTCCAACTCGAACGATTGTGTAT
CCAGTGCACGCTGCAAATCCTCTCGTAACCCGTCTGATGTGCAACGGTCAGTCGACAAGC
CTTCATGTGCATAGTCGATGTCTTGCACCGGTGACGTGGATCGACCAACTGTTTCGCATA
GGCGACGTGAGGCCCGTTCGTACTCACTCACTCTGTTCGCCATGTCGGCACGGTCAGCAT
TCGCCTCAGCATGTGCTGCACGCAATTCTTTCACCTGCTTCAACAAGAAACCAAGTGATC
CTCTGACCTCATCCATCTCCATGCAC

consensusID : consensus_471#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 296
fasta sequence

                              [CTGCAAATCCTCGTCGTAACCCGTCTGATAGTGCAACCGGTCACGTCGACAAGCCTTCTATGTGCATAGATCGATGTCTTGCACCCCGGTGACAGTGGATGCGACCACACTGTTTCGCATATGGCGAACNGTGAGGCCCCGTTTCGTACTCTACTCACTCTGTTCGNNACATGTCGGCACCCGGTCAGCATTCGCCTCAGCATGTGCTGCACGCAATTCTTTCACCTGCTTCAACAAGAAACCAAGTGATCCTCTGACCTCATCCATCTCATGCACAACTGTGTGCGAGATTCGGG]

[-] EMBL CD061428             [CTGCAAATCCTCGTCGTAACCCGTCTGATAGTGCAACCGGTCACGTCGACAAGCCTTCTATGTGCATAGATCGATGTCTTGCACCCCGGTGACAGTGGATGCGACCACACTGTTTCGCATATGGCGAACNGTGAGGCCCCGTTTCGTACTCTACTCACTCTGTTCGNNACATGTCGGCACCCGGTCAGCATTCGCCTCAGCATGTGCTGCACGCAATTCTTTCACCTGCTTCAACAAGAAACCAAGTGATCCTCTGACCTCATCCATCTCATGCACAACTGTGTGCGAGATTCGGG]




>consensus_471#1
CTGCAAATCCTCGTCGTAACCCGTCTGATAGTGCAACCGGTCACGTCGACAAGCCTTCTA
TGTGCATAGATCGATGTCTTGCACCCCGGTGACAGTGGATGCGACCACACTGTTTCGCAT
ATGGCGAACNGTGAGGCCCCGTTTCGTACTCTACTCACTCTGTTCGNNACATGTCGGCAC
CCGGTCAGCATTCGCCTCAGCATGTGCTGCACGCAATTCTTTCACCTGCTTCAACAAGAA
ACCAAGTGATCCTCTGACCTCATCCATCTCATGCACAACTGTGTGCGAGATTCGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_471#0      CAGAAAGTAGAGTTTCAGTTGGACTAACCAAGTCGGATTCCTTGAACTCACAACGATTAT 60
consensus_471#1      ------------------------------------------------------------
                                                                                 

consensus_471#0      CAGGAGAGTTCAACGATATACCACCGACCTCCAAACGAGAACTAAAATGCCTTACAGGCG 120
consensus_471#1      ------------------------------------------------------------
                                                                                 

consensus_471#0      GAGGTAAATCAAATTTCAGACGCTTCTTGGGAGAATCAGGCTCACAAATCATGTCATTGT 180
consensus_471#1      ------------------------------------------------------------
                                                                                 

consensus_471#0      TCACTGACTCACATTCTTTCAGTTTCTCAGTGACCACCTCCAACTCGAACGATTGTGTAT 240
consensus_471#1      ------------------------------------------------------------
                                                                                 

consensus_471#0      CCAGTGCACGCTGCAAATCCTC-TCGTAACCCGTCTGAT-GTGCAAC-GGTCA-GTCGAC 296
consensus_471#1      ----------CTGCAAATCCTCGTCGTAACCCGTCTGATAGTGCAACCGGTCACGTCGAC 50
                               ************ **************** ******* ***** ******

consensus_471#0      AAGCCTTC-ATGTGCATAG-TCGATGTCTTGCACC--GGTGAC-GTGGAT-CGACCA-AC 349
consensus_471#1      AAGCCTTCTATGTGCATAGATCGATGTCTTGCACCCCGGTGACAGTGGATGCGACCACAC 110
                     ******** ********** ***************  ****** ****** ****** **

consensus_471#0      TGTTTCGCATA-GGCGA--CGTGAGGCCCG--TTCGTACTC-ACTCACTCTGTTCGCCA- 402
consensus_471#1      TGTTTCGCATATGGCGAACNGTGAGGCCCCGTTTCGTACTCTACTCACTCTGTTCGNNAC 170
                     *********** *****   *********   ********* **************  * 

consensus_471#0      -TGTCGGCAC--GGTCAGCATTCGCCTCAGCATGTGCTGCACGCAATTCTTTCACCTGCT 459
consensus_471#1      ATGTCGGCACCCGGTCAGCATTCGCCTCAGCATGTGCTGCACGCAATTCTTTCACCTGCT 230
                      *********  ************************************************

consensus_471#0      TCAACAAGAAACCAAGTGATCCTCTGACCTCATCCATCTCCATGCAC------------- 506
consensus_471#1      TCAACAAGAAACCAAGTGATCCTCTGACCTCATCCATCTC-ATGCACAACTGTGTGCGAG 289
                     **************************************** ******             

consensus_471#0      -------
consensus_471#1      ATTCGGG 296