cluster # 4723

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Schistosoma mansoni
cluster # 4723 cluster # 4723 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4723#0 length = 598 sequences # 2

consensus_4723#1 length = 348 sequences # 1

consensusID : consensus_4723#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 598
fasta sequence

                              [ACATGTTGCCAATGTCAAGGTCATATTCTTTGAGCGCCGAACGAACGTAATTGCTATTAAGGACCTCATAACGCTTAGCCAGACAGGATTCACAACCAGATGTATTTTCCTTACACTCGTTACACTTCCTTATACGGGTTGGCAACAACCGTGACTTTCTTTTTTGTTTGGTGACCAGTTTCGCATCATCCAAAATATGAGTACCAATAAAGCTTTCCAAAGCTTCAGACTTCGCTTTACTCATTGAATTCTCATCTGAAGGTTCTGTTATAGTTGATTGTGACTTTGTGACTTTTTCCTCTCCTTCATTTAATAAGCGTAAAGTATCCAAATACTTCTCCTCTTCTTCAGCCGGCCACTCAACTTTAGCCGTCGCACCATCAGTGCTGGTAGTGTCTCCAGATGGTAAAGTCCAATACCTGATGTCGGACAAAGGGACATCAGAAGACAAGACTGCAGCATTCTCCTTACCAGCAGTCAGATCGTATTCAAACTTTGAGGGATCAACGAATGAAGCATCGTAAGTTGCCAAGACTTTACCATCGCTAGTGTACAGTAGACGGATTTGCTGGGGTGGACTCAAGTTTATCTCTTCCCC]

[+] EMBL CD188007             [ACATGTTGCCAATGTCAAGGTCATATTCTTTGAGCGCCGAACGAACGTAATTGCTATTAAGGACCTCATAACGCTTAGCCAGACAGGATTCACAACCAGATGTATTTTCCTTACACTCGTTACACTTCCTTATACGGGTTGGCAACAACCGTGACTTTCTTTTTTGTTTGGTGACCAGTTTCGCATCATCCAAAATATGAGTACCAATAAAGCTTTCCAAAGCTTCAGACTTCGCTTTACTCATTGAATTCTCATCTGAAGGTTCTGTTATAGTTGATTGTGACTTTGTGACTTTTTCCTCTCCTTCATTTAATAAGCGTAAAGTATCCAAATACTTCTCCTCTTCTTCAGCCGGCCACTCAACTTTAGCCGTCGCACCATCAGTGCTGGTAGTGTCTCCAGATGGTAAAGTCCAATACCTGATGTCGGACAAAGGGACAT                                                                                                                                                             ]
[-] EMBL CD068972             [                                                                                                                                                                TTTTTGTTTGGTGACCAGTTTCGCATCATCCAAAATATGAGTACCAATAAAGCTTTCCAAAGCTTCAGACTTCGCTTTACTCATTGAATTCTCATCTGAAGGTTCTGTTATAGTTGATTGTGACTTTGTGACTTTTTCCTCTCCTTCATTTAATAAGCGTAAAGTATCCAAATACTTCTCCTCTTCTTCAGCCGGCCACTCAACTTTAGCCGTCGCACCATCAGTGCTGGTAGTGCCTCCAGATGGTAAAGTCCAATACCTGATGTCGGACAAAGGGACATCAGAAGACAAGACTGCAGCATTCTCCTTACCAGCAGTCAGATCGTATTCAAACTTTGAGGGATCAACGAATGAAGCATCGTAAGTTGCCAAGACTTTACCATCGCTAGTGTACAGTAGACGGATTTGCTGGGGTGGACTCAAGTTTATCTCTTCCCC]




>consensus_4723#0
ACATGTTGCCAATGTCAAGGTCATATTCTTTGAGCGCCGAACGAACGTAATTGCTATTAA
GGACCTCATAACGCTTAGCCAGACAGGATTCACAACCAGATGTATTTTCCTTACACTCGT
TACACTTCCTTATACGGGTTGGCAACAACCGTGACTTTCTTTTTTGTTTGGTGACCAGTT
TCGCATCATCCAAAATATGAGTACCAATAAAGCTTTCCAAAGCTTCAGACTTCGCTTTAC
TCATTGAATTCTCATCTGAAGGTTCTGTTATAGTTGATTGTGACTTTGTGACTTTTTCCT
CTCCTTCATTTAATAAGCGTAAAGTATCCAAATACTTCTCCTCTTCTTCAGCCGGCCACT
CAACTTTAGCCGTCGCACCATCAGTGCTGGTAGTGTCTCCAGATGGTAAAGTCCAATACC
TGATGTCGGACAAAGGGACATCAGAAGACAAGACTGCAGCATTCTCCTTACCAGCAGTCA
GATCGTATTCAAACTTTGAGGGATCAACGAATGAAGCATCGTAAGTTGCCAAGACTTTAC
CATCGCTAGTGTACAGTAGACGGATTTGCTGGGGTGGACTCAAGTTTATCTCTTCCCC

consensusID : consensus_4723#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 348
fasta sequence

                              [GACCTGCCGCACCAGGACCTCATAACGCTTAGCCAGACAGGATTCACAACCAGATGTATTTTCCTTACACTCGTTACACTTCCTTATACGGGTTGGCAACAACCGTGACTTTCTTTTTTGTTTGGTGACCAGTTTCGCATCATCCAAAATATGAGTACCAATAAAGCTTTCCAAAGCTTCAGACTTCGCTTTACTCATTGAATTCTCATCTGAAGGTTCTGTTATAGTTGATTGTGACTTTGTGACTTTTTCCTCTCCTTCATTTAATAAGCGTAAAGTATCCAAATACTTCTCCTCTTCTTCAGCCGGNCACTCAACTNTAGCCGTCGCACCATCAGTGCTGGTAGT]

[+] EMBL CD194044             [GACCTGCCGCACCAGGACCTCATAACGCTTAGCCAGACAGGATTCACAACCAGATGTATTTTCCTTACACTCGTTACACTTCCTTATACGGGTTGGCAACAACCGTGACTTTCTTTTTTGTTTGGTGACCAGTTTCGCATCATCCAAAATATGAGTACCAATAAAGCTTTCCAAAGCTTCAGACTTCGCTTTACTCATTGAATTCTCATCTGAAGGTTCTGTTATAGTTGATTGTGACTTTGTGACTTTTTCCTCTCCTTCATTTAATAAGCGTAAAGTATCCAAATACTTCTCCTCTTCTTCAGCCGGNCACTCAACTNTAGCCGTCGCACCATCAGTGCTGGTAGT]




>consensus_4723#1
GACCTGCCGCACCAGGACCTCATAACGCTTAGCCAGACAGGATTCACAACCAGATGTATT
TTCCTTACACTCGTTACACTTCCTTATACGGGTTGGCAACAACCGTGACTTTCTTTTTTG
TTTGGTGACCAGTTTCGCATCATCCAAAATATGAGTACCAATAAAGCTTTCCAAAGCTTC
AGACTTCGCTTTACTCATTGAATTCTCATCTGAAGGTTCTGTTATAGTTGATTGTGACTT
TGTGACTTTTTCCTCTCCTTCATTTAATAAGCGTAAAGTATCCAAATACTTCTCCTCTTC
TTCAGCCGGNCACTCAACTNTAGCCGTCGCACCATCAGTGCTGGTAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4723#0      ACATGTTGCCAATGTCAAGGTCATATTCTTTGAGCGCCGAACGAACGTAATTGCTAT-TA 59
consensus_4723#1      -----------------------------------------------GACCTGCCGCACC 13
                                                                      *  ***      

consensus_4723#0      AGGACCTCATAACGCTTAGCCAGACAGGATTCACAACCAGATGTATTTTCCTTACACTCG 119
consensus_4723#1      AGGACCTCATAACGCTTAGCCAGACAGGATTCACAACCAGATGTATTTTCCTTACACTCG 73
                      ************************************************************

consensus_4723#0      TTACACTTCCTTATACGGGTTGGCAACAACCGTGACTTTCTTTTTTGTTTGGTGACCAGT 179
consensus_4723#1      TTACACTTCCTTATACGGGTTGGCAACAACCGTGACTTTCTTTTTTGTTTGGTGACCAGT 133
                      ************************************************************

consensus_4723#0      TTCGCATCATCCAAAATATGAGTACCAATAAAGCTTTCCAAAGCTTCAGACTTCGCTTTA 239
consensus_4723#1      TTCGCATCATCCAAAATATGAGTACCAATAAAGCTTTCCAAAGCTTCAGACTTCGCTTTA 193
                      ************************************************************

consensus_4723#0      CTCATTGAATTCTCATCTGAAGGTTCTGTTATAGTTGATTGTGACTTTGTGACTTTTTCC 299
consensus_4723#1      CTCATTGAATTCTCATCTGAAGGTTCTGTTATAGTTGATTGTGACTTTGTGACTTTTTCC 253
                      ************************************************************

consensus_4723#0      TCTCCTTCATTTAATAAGCGTAAAGTATCCAAATACTTCTCCTCTTCTTCAGCCGGCCAC 359
consensus_4723#1      TCTCCTTCATTTAATAAGCGTAAAGTATCCAAATACTTCTCCTCTTCTTCAGCCGGNCAC 313
                      ******************************************************** ***

consensus_4723#0      TCAACTTTAGCCGTCGCACCATCAGTGCTGGTAGTGTCTCCAGATGGTAAAGTCCAATAC 419
consensus_4723#1      TCAACTNTAGCCGTCGCACCATCAGTGCTGGTAGT------------------------- 348
                      ****** ****************************                         

consensus_4723#0      CTGATGTCGGACAAAGGGACATCAGAAGACAAGACTGCAGCATTCTCCTTACCAGCAGTC 479
consensus_4723#1      ------------------------------------------------------------
                                                                                  

consensus_4723#0      AGATCGTATTCAAACTTTGAGGGATCAACGAATGAAGCATCGTAAGTTGCCAAGACTTTA 539
consensus_4723#1      ------------------------------------------------------------
                                                                                  

consensus_4723#0      CCATCGCTAGTGTACAGTAGACGGATTTGCTGGGGTGGACTCAAGTTTATCTCTTCCCC 598
consensus_4723#1      -----------------------------------------------------------