These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4747#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 697 fasta sequence [CCAAGAATTCGGCACGAGGGCCGAATAAGCGGGCGATAGTAATGTCTGACTTGTGCCGTTTAGTAAAGGAGATAGGAATCGAGGTTCAACAACTTTCCAGTCAGGTCGAGCTAGAGAAGAACAATATATCACATCTTCAACAAAAGCTAATTTCTTTAACTCAAGAAGCTGAGTCTCAAAAAAAGTTCAAGCAGCATCTAGAGGAAGAGTTAAGGAATTTAGAGGAAACATATTTTCAGCCAGATGATTACAGCTGTGGTCTTTCAGACGTCAGTGAAGTAATAAATGAACAAATTCGTTGCCTTAACGTAATCCTTTCAGAGATCATGAGCAGTAATGAGCGAATTAGGAAAGAAAGAATTGACTTTATCCTGGAATACAAACAAAAGCTAGATGATTACAACCGACATATAGCACAAAATGAAAAGCTACACGCCTTTATCGAGTTGTGGAAAGTGAAATGTACTGAAAACTTTAAGCTGACTGCGATTCCTGATGTGATAAGAGAAATAGCTGAAGAAATATCCAGTTCCTACAACGTGTCTATTGTGGAGACACTAAAAAACGCACTAAGTGCATCAGCAGTAGAAAGCGAAGAAACAAGGATATCTTCCCCCCAAAATGTATGCATTGCGGAAAAAAAAGAGATTCCTGCGATTATTCCAAAAACTCAGTCAAATACTACATCGGATGAANC] [+] EMBL CD081410 [CCAAGAATTCGGCACGAGGGCCGAATAAGCGGGCGATAGTAATGTCTGACTTGTGCCGTTTAGTAAAGGAGATAGGAATCGAGGTTCAACAACTTTCCAGTCAGGTCGAGCTAGAGAAGAACAATATATCACATCTTCAACAAAAGCTAATTTCTTTAACTCAAGAAGCTGAGTCTCAAAAAAAGTTCAAGCAGCATCTAGAGGAAGAGTTAAGGAATTTAGAGGAAACATATTTTCAGCCAGATGATTACAGCTGTGGTCTTTCAGACGTCAGTGAAGTAATAAATGAACAAATTCGTTGCCTTAACGTAATCCTTTCAGAGATCATGAGCAGTAATGAGCGAATTAGGAAAGAAAGAATTGACTTTATCCTGGAATACAAACAAAAGCTAGATGATTACAACCGACATATAGCACAAAATGAAAAGCTACACGCCTTTATCGAGTTGTGGAAAGTGAAATGTACTGAAAACTTTAAGCTGACTGCGATTCCTGATGTGATAAGAGAAATAGCTGAAGAAATATCCAGTTCCTACAACGTGTCTATTGTGGAGACACTAAAAAACGCACTAAGTGCATCAGCAGTAGAAAGCGAAGAAACAAGGATATCTTCCCCCCAAAATGTATGCATTGCGGAAAAAAAAGAGATTCCTGCGATTATTCCAAAAACTCAGTCAAATACTACATCGGATGAANC] consensusID : consensus_4747#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 407 fasta sequence [CGAGCTAGAGAAGAACAATATATCACATCTTCAACAAAAGCTAATTTCTTTAACTCAAGAAGCTGAGTCTCAAAAAAAAGTTCAAGCAGCATCTAGAGGAAGAGTTAAGGAATTTAGAGGAAACATATTTTCAGCCAGATGATTACAGCTGTGGTCTTTCAGACGTCAGTGAAGTAATAAATGAACAAATTCGTTGCCTTAACGTAATCCTTTCAGAGATCATGAGCAGTAATGAGCGAATTAGGTTACAGTTTCCCACTTAAGAATTACGAACAATCTGATACTCAACGAGACTGTACGATGAATATGGATGTAACGATATGTGGGGAAAATGATGCATCTTCTTATTAGATTTACAACTAGACATAATTTTTCTGTATAGTTGTTTATTGATATGCGCAATAAAG] [-] EMBL CD128254 [CGAGCTAGAGAAGAACAATATATCACATCTTCAACAAAAGCTAATTTCTTTAACTCAAGAAGCTGAGTCTCAAAAAAAAGTTCAAGCAGCATCTAGAGGAAGAGTTAAGGAATTTAGAGGAAACATATTTTCAGCCAGATGATTACAGCTGTGGTCTTTCAGACGTCAGTGAAGTAATAAATGAACAAATTCGTTGCCTTAACGTAATCCTTTCAGAGATCATGAGCAGTAATGAGCGAATTAGGTTACAGTTTCCCACTTAAGAATTACGAACAATCTGATACTCAACGAGACTGTACGATGAATATGGATGTAACGATATGTGGGGAAAATGATGCATCTTCTTATTAGATTTACAACTAGACATAATTTTTCTGTATAGTTGTTTATTGATATGCGCAATAAAG] consensusID : consensus_4747#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 241 fasta sequence [ATAAACTTTATGGCGCATATTCAATAACCAACTATAACAAAAAAATTTTGTCTAGTGGTAAATCTAATAAAAAAATGCTTCTTTTTCCCCACATATGGTTACATCCATATTCATCGAACAGTCTCGTTGAGTATCAAATGGTTCGTAATTTTTAAGGGGGAAACTGTAACTTTTTTTTTTTACAAGCGATGAAATCACCCTATTTTCAAGGGCAAACCCCCGTAAGCGACTTGCATCCAAA] [+] EMBL CD075240 [ATAAACTTTATGGCGCATATTCAATAACCAACTATAACAAAAAAATTTTGTCTAGTGGTAAATCTAATAAAAAAATGCTTCTTTTTCCCCACATATGGTTACATCCATATTCATCGAACAGTCTCGTTGAGTATCAAATGGTTCGTAATTTTTAAGGGGGAAACTGTAACTTTTTTTTTTTACAAGCGATGAAATCACCCTATTTTCAAGGGCAAACCCCCGTAAGCGACTTGCATCCAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4747#0 CCAAGAATTCGGCACGAGGGCCGAATAAGCGGGCGATAGTAATGTCTGACTTGTGCCGTT 60 consensus_4747#1 ------------------------------------------------------------ consensus_4747#2 ------------------------------------------------------------ consensus_4747#0 TAGTAAAGGAGATAGGAATCGAGGTTCAACAACTTTCCAGTCAGGTCGAGCTAGAGAAGA 120 consensus_4747#1 ----------------------------------------------CGAGCTAGAGAAGA 14 consensus_4747#2 ------------------------------------------------------------ consensus_4747#0 ACAATATATCACATCTTCAACAAAAGCTAATTTCTTTAACTCAAGAAGCTGAGTCTCAAA 180 consensus_4747#1 ACAATATATCACATCTTCAACAAAAGCTAATTTCTTTAACTCAAGAAGCTGAGTCTCAAA 74 consensus_4747#2 --------------------ATAAACTTTATGGCGCATATTCAATAA-CCAACTATAACA 39 *** * ** * * **** ** * * * * * * consensus_4747#0 AAAA-GTTCAAGCAGCATCTAGAGGAAGAGTTAAGGAATTTAGAGGAAACATATTTTCAG 239 consensus_4747#1 AAAAAGTTCAAGCAGCATCTAGAGGAAGAGTTAAGGAATTTAGAGGAAACATATTTTCAG 134 consensus_4747#2 AAAAAATTT------TGTCTAGTGGTAAATCTAATAAA---AAAATGCTTCTTTTTCCCC 90 **** ** ***** ** * * *** ** * * * *** * consensus_4747#0 CCAGATGATTACAGCTGTGGTCTTTCAGACGTCA-GTGAAGTAATAAATGAACAAATTCG 298 consensus_4747#1 CCAGATGATTACAGCTGTGGTCTTTCAGACGTCA-GTGAAGTAATAAATGAACAAATTCG 193 consensus_4747#2 ACATATGGTTACATCCATATTCATCGAACAGTCTCGTTGAGTATCAAATG-----GTTCG 145 ** *** ***** * * ** * * *** ** **** ***** **** consensus_4747#0 TTGCCTTAACGTAATCCTTTCAGAGATCATGAGCAGTAATGAGCGAATTAGGAAAGAAAG 358 consensus_4747#1 TTGCCTTAACGTAATCCTTTCAGAGATCATGAGCAGTAATGAGCGAATTAGG-------- 245 consensus_4747#2 TAATTTTTAAGGGGGAAACT--GTAACTTTTTTTTTTTACAAGCGA-TGAAA-------- 194 * ** * * * * * * * * ***** * * consensus_4747#0 AATTGACTTTATCCTGGAATACAAACAAAAGCTAGATGATTACAACCGACATATAGCACA 418 consensus_4747#1 ---TTACAGTTTCCCACTTAAGAATTACGAACAATCTGATACTCAACGAGAC----TGTA 298 consensus_4747#2 ---TCACCCTATTTTCAAGGGCAAACCCCCGTAAGCGACTTGCATCCAAA---------- 241 * ** * * ** * * * * consensus_4747#0 AAATGAAAAGCTACACGCCTTTATCGAGTTGTGGAAAGTGAAATGTACTGAAAACTTTAA 478 consensus_4747#1 CGATGAA------TATGGATGTAACGATATGTGGGGAAAATGATGCATCTTCT-TATTAG 351 consensus_4747#2 ------------------------------------------------------------ consensus_4747#0 GCTGACTGCGATTCCTGATGTGATAAGAGAAATAGCTGAAGAAATATCCAGTTCCTACAA 538 consensus_4747#1 ATTTACAACTAGACATAATTTTTCTGTATAGTTGTTTATTGATATGCGCAATAAAG---- 407 consensus_4747#2 ------------------------------------------------------------ consensus_4747#0 CGTGTCTATTGTGGAGACACTAAAAAACGCACTAAGTGCATCAGCAGTAGAAAGCGAAGA 598 consensus_4747#1 ------------------------------------------------------------ consensus_4747#2 ------------------------------------------------------------ consensus_4747#0 AACAAGGATATCTTCCCCCCAAAATGTATGCATTGCGGAAAAAAAAGAGATTCCTGCGAT 658 consensus_4747#1 ------------------------------------------------------------ consensus_4747#2 ------------------------------------------------------------ consensus_4747#0 TATTCCAAAAACTCAGTCAAATACTACATCGGATGAANC 697 consensus_4747#1 --------------------------------------- consensus_4747#2 --------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||