These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_477#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 270 fasta sequence [CCAGTAAGGTAGCATTCACTTTTCGAAAGTTATTACAAAGTAGGTCTACTCACTGCCTTATAAGGATAAACAACGACGTGACTTCGACATAAATCATGGAGAGTTTGCAATAATATTTCAGTCAGACAAATGCATTGAATCCAGTCTTTTCGCTTTATCGAATAGATACACTCATAAACATCATTCAGTAGTATTATATCATGGTGTTGAATCTGATATATTCGTCATTTTTAAAGTAAGACAATCATAAATATGTGAGTAGATTGTCCT] [+] EMBL AI764906 [CCAGTAAGGTAGCATTCACTTTTCGAAAGTTATTACAAAGTAGGTCTACTCACTGCCTTATAAGGATAAACAACGACGTGACTTCGACATAAATCATGGAGAGTTTGCAATAATATTTCAGTCAGACAAATGCATTGAATCCAGTCTTTTCGCTTTATCGAATAGATACACTCATAAACATCATTCAGTAGTATTATATCATGGTGTTGAATCTGATATATTCGTCATTTTTAAAGTAAGACAATCATAAATATGTGAGTAGATTGTCCT] consensusID : consensus_477#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 199 fasta sequence [CAATCCAGTCTTTTTCGCTTTATTCGAATAGATATCACCTGCATAGAACATCATTCAGTACGTATTATATACATGGTGTTGAATCTGATATATTCGTCATTTTTAAAGTNGTGACAATCATAAATATGTGACTGNATTGTCCTTCATGACATGCCTAATTCAAATTACACATAGACAACCTGTNNGTCCATCTGCAACA] [-] EMBL AI764806 [CAATCCAGTCTTTTTCGCTTTATTCGAATAGATATCACCTGCATAGAACATCATTCAGTACGTATTATATACATGGTGTTGAATCTGATATATTCGTCATTTTTAAAGTNGTGACAATCATAAATATGTGACTGNATTGTCCTTCATGACATGCCTAATTCAAATTACACATAGACAACCTGTNNGTCCATCTGCAACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_477#0 CCAGTAAGGTAGCATTCACTTTTCGAAAGTTATTACAAAGTAGGTCTACTCACTGCCTTA 60 consensus_477#1 ------------------------------------------------------------ consensus_477#0 TAAGGATAAACAACGACGTGACTTCGACATAAATCATGGAGAGTTTGCAATAATATTTCA 120 consensus_477#1 ------------------------------------------------------------ consensus_477#0 GTCAGACAAATGCATTGAATCCAGTCTTTT-CGCTTTAT-CGAATAGATA-CACTCATA- 176 consensus_477#1 ----------------CAATCCAGTCTTTTTCGCTTTATTCGAATAGATATCACCTGCAT 44 ************* ******** ********** *** * consensus_477#0 --AACATCATTCAGTA-GTATTATAT-CATGGTGTTGAATCTGATATATTCGTCATTTTT 232 consensus_477#1 AGAACATCATTCAGTACGTATTATATACATGGTGTTGAATCTGATATATTCGTCATTTTT 104 ************** ********* ********************************* consensus_477#0 AAAGTAA-GACAATCATAAATATGTGAGTAGATTGTCCT--------------------- 270 consensus_477#1 AAAGTNGTGACAATCATAAATATGTGACTGNATTGTCCTTCATGACATGCCTAATTCAAA 164 ***** ******************* * ******** consensus_477#0 ----------------------------------- consensus_477#1 TTACACATAGACAACCTGTNNGTCCATCTGCAACA 199 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||