cluster # 4773

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Schistosoma mansoni
cluster # 4773 cluster # 4773 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4773#0 length = 257 sequences # 2

consensus_4773#1 length = 179 sequences # 1

consensusID : consensus_4773#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 257
fasta sequence

                              [ACTCCACATCAAAGAGGGCACTCAAATGTTTACGAAATAAATACTGAGCTATACCTAAAAAGTGGAAGCATGAGATAACATACACATGGTCGAATAACATAGGTTGACTGAGTCATAACTATCAACCAAAAAACTATTGTTTTACACCAGAATAAAATAGGGTCCAATTAAAAACCTTAGGCACAACAGGGAGTTTACAATGACGAAGATGAATCTACGGTGTACAATCTCCCTGGTCAATGATAGACTGTTCTATT]

[+] EMBL CD190916             [ACTCCACATCAAAGAGGGCACTCAAATGTTTACGAAATAAATACTGAGCTATACCTAAAAAGTGGAAGCATGAGATAACATACACATGGTCGAATAACATAGGTTGACTGAGTCATAACTATCAACCAAAAAACTATTGTTTTACACCAGAATAAAATAGGGTCCAATTAAAAACCTTAGGCACAACAGGGAGTTTACAATGACGAAGATGAATCTACGGTGTACAATCTCCCTGGTCAATGATAGACTGTTCTATT]
[+] EMBL CD190964             [ACTCCACATCAAAGAGGGCACTCAAATGTTTACGAAATAAATACTGAGCTATACCTAAAAAGTGGAAGCATGAGATAACATACACATGGTCGAATAACATAGGTTGACTGAGTCATAACTATCAACCAAAAAACTATTGTTTTACACCAGAATAAAATAGGGTCCAATTAAAAACCTTAGGCACAACAGGGAGTTTACAATGACGAAGATGAATCTACGGTGTACAATCTCCCTGGTCAATGATAGACTGTTCTATT]




>consensus_4773#0
ACTCCACATCAAAGAGGGCACTCAAATGTTTACGAAATAAATACTGAGCTATACCTAAAA
AGTGGAAGCATGAGATAACATACACATGGTCGAATAACATAGGTTGACTGAGTCATAACT
ATCAACCAAAAAACTATTGTTTTACACCAGAATAAAATAGGGTCCAATTAAAAACCTTAG
GCACAACAGGGAGTTTACAATGACGAAGATGAATCTACGGTGTACAATCTCCCTGGTCAA
TGATAGACTGTTCTATT

consensusID : consensus_4773#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 179
fasta sequence

                              [ACTCCACATCAAAGTATGGCACTCAAATGATTACTAAATAGATACTGAGCTATACCTAAAAAGTGGAATCATGACATAACATACACATGGTCAAATAACATAAGGCGACTGAATCATAACTATCAACCAAAAAACTATTGTTTTACACAAAAATAAAATAAGGTCCAATAAAAAACCTT]

[+] EMBL CD190910             [ACTCCACATCAAAGTATGGCACTCAAATGATTACTAAATAGATACTGAGCTATACCTAAAAAGTGGAATCATGACATAACATACACATGGTCAAATAACATAAGGCGACTGAATCATAACTATCAACCAAAAAACTATTGTTTTACACAAAAATAAAATAAGGTCCAATAAAAAACCTT]




>consensus_4773#1
ACTCCACATCAAAGTATGGCACTCAAATGATTACTAAATAGATACTGAGCTATACCTAAA
AAGTGGAATCATGACATAACATACACATGGTCAAATAACATAAGGCGACTGAATCATAAC
TATCAACCAAAAAACTATTGTTTTACACAAAAATAAAATAAGGTCCAATAAAAAACCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4773#0      ACTCCACATCAAAG-AGGGCACTCAAATGTTTACGAAATAAATACTGAGCTATACCTAAA 59
consensus_4773#1      ACTCCACATCAAAGTATGGCACTCAAATGATTACTAAATAGATACTGAGCTATACCTAAA 60
                      ************** * ************ **** ***** *******************

consensus_4773#0      AAGTGGAAGCATGAGATAACATACACATGGTCGAATAACATAGGTTGACTGAGTCATAAC 119
consensus_4773#1      AAGTGGAATCATGACATAACATACACATGGTCAAATAACATAAGGCGACTGAATCATAAC 120
                      ******** ***** ***************** ********* *  ****** *******

consensus_4773#0      TATCAACCAAAAAACTATTGTTTTACACCAGAATAAAATAGGGTCCAATTAAAAACCTTA 179
consensus_4773#1      TATCAACCAAAAAACTATTGTTTTACACAAAAATAAAATAAGGTCCAATAAAAAACCTT- 179
                      **************************** * ********* ******** ********* 

consensus_4773#0      GGCACAACAGGGAGTTTACAATGACGAAGATGAATCTACGGTGTACAATCTCCCTGGTCA 239
consensus_4773#1      ------------------------------------------------------------
                                                                                  

consensus_4773#0      ATGATAGACTGTTCTATT 257
consensus_4773#1      ------------------