These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4806#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 462 fasta sequence [ACTTAGTCTGTAGCTCCAGTATTTCCATCATCATGACGACGCTTTGCACGTGTTACACGAAATATAATGCGACGATTTGTGAGACGATTATAAATTGCACTTGGTCGAGAACCGCTACTTGACAGTAGTGCTTGATTTGTTAGGACTTGAATAATCTGTTGTAAGTGCTCGTCGGATACATCCTGTGTAGTTATGTACTGGTTTCCTTGTTGTATAATCCTGATGGGGTTTTTATTTGAACCCACAGGAGCATTTGGATCAGCAGCTGGCATGCGAGCCTGGATTTTCTGAACCTCTTCTAAATCAATGGGTTCGATATCTAAGCCTGCTTGTGAAGGCTCTTGAGGGACAACCATTGACGAATCATATGCATTATTCGCTAATTCTATTGTATTAGGTACTGATGAAACAAGCTGAACACTTT-GCCCAACCACTGGT-GCAAAGCC-GGCAGCAGAAGTTCCT] [-] EMBL CD155321 [ACTTAGTCTGTAGCTCCAGTATTTCCATCATCATGACGACGCTTTGCACGTGTTACACGAAATATAATGCGACGATTTGTGAGACGATTATAAATTGCACTTGGTCGAGAACCGCTACTTGACAGTAGTGCTTGATTTGTTAGGACTTGAATAATCTGTTGTAAGTGCTCGTCGGATACATCCTGTGTAGTTATGTACTGGTTTCCTTGTTGTATAATCCTGATGGGGTTTTTATTTGAACCCACAGGAGCATTTGGATCAGCAGCTGGCATGCGAGCCTGGATTTTCTGAACCTCTTCTAAATCAATGGGTTCGATATCTAAGCCTGCTTGTGAAGGCTCTTGAGGGACAACCATTGACGAATCATATGCATTATTCGCTAATTCTATTGTATTAGGTACTGATGAAACAAGCTGAACACTTT GCCCAACCACTGGT GCAAAGCC GGCAGCAGAAGT ] [+] EMBL CD148795 [ tgCTGTAGCTCCAGTATTTCCATCATCATGACGACGCTTTGCACGTGTTACACGAAATATAATGCGACGATTTGTGAGACGATTATAAATTGCACTTGGTCGAGAACCGCTACTTGACAGTAGTGCTTGATTTGTTAGGACTTGAATAATCTGTTGTAAGTGCTCGTCGGATACATCCTGTGTAGTTATGTACTGGTTTCCTTGTTGTATAATCCTGATGGGGTTTTTATTTGAACCCACAGGAGCATTTGGATCANCAGCTGGCATGCGAGCCTGGATTTTTTGAACCTCTTCTAAATCAATGGGTTCGATATCTAACCCTGCTTGTGAAGGCTCTTGAGGGACAACCATCGACCAATCATATGCATTATTCGCTCATTCTATTGTATTAAGGACTGATGAAACAAGCTGAACATTTTGGCCCCACCACTGGTGGCCAATCCGGGGAGCACAAATTCCT] consensusID : consensus_4806#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 414 fasta sequence [TTGCACTTGGTCGAGAACCGCTACTTGACAGTAGTGCTTGATTTGTTAGGACTTGAATAATCTGTTGTTAGTGCTCGTCGGATACATCCTGTGTAGTTATGTACTGGTTTCCTTGTTGTATAATCCTGATGGGGTTTTTTATTTGAACCCACAGGAGCATTTGGATCAGCAGCTGGCATGCGAGCCTGGATTTTCTGAACCTCTTCTAAATCAATGGGTTCGATATCTAAGCCTGCTTGTGAAGGCTCTTGAGGGACAACCATTGACGAATCATATGCATTATTCGCTATTNCACTNNGTGCAAGCCGCAGCAGAAGTCCATANACACTTGAGTATTCTGAAACTGGATTTCGTCACGTTTAAATCTTCATTTACGAGCGATNCTGATAGAGGCTGCAAAGAATTGCATCAAAC] [+] EMBL CD182495 [TTGCACTTGGTCGAGAACCGCTACTTGACAGTAGTGCTTGATTTGTTAGGACTTGAATAATCTGTTGTTAGTGCTCGTCGGATACATCCTGTGTAGTTATGTACTGGTTTCCTTGTTGTATAATCCTGATGGGGTTTTTTATTTGAACCCACAGGAGCATTTGGATCAGCAGCTGGCATGCGAGCCTGGATTTTCTGAACCTCTTCTAAATCAATGGGTTCGATATCTAAGCCTGCTTGTGAAGGCTCTTGAGGGACAACCATTGACGAATCATATGCATTATTCGCTATTNCACTNNGTGCAAGCCGCAGCAGAAGTCCATANACACTTGAGTATTCTGAAACTGGATTTCGTCACGTTTAAATCTTCATTTACGAGCGATNCTGATAGAGGCTGCAAAGAATTGCATCAAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4806#0 ACTTAGTCTGTAGCTCCAGTATTTCCATCATCATGACGACGCTTTGCACGTGTTACACGA 60 consensus_4806#1 ------------------------------------------------------------ consensus_4806#0 AATATAATGCGACGATTTGTGAGACGATTATAAATTGCACTTGGTCGAGAACCGCTACTT 120 consensus_4806#1 ----------------------------------TTGCACTTGGTCGAGAACCGCTACTT 26 ************************** consensus_4806#0 GACAGTAGTGCTTGATTTGTTAGGACTTGAATAATCTGTTGTAAGTGCTCGTCGGATACA 180 consensus_4806#1 GACAGTAGTGCTTGATTTGTTAGGACTTGAATAATCTGTTGTTAGTGCTCGTCGGATACA 86 ****************************************** ***************** consensus_4806#0 TCCTGTGTAGTTATGTACTGGTTTCCTTGTTGTATAATCCTGATGGGGTTTTT-ATTTGA 239 consensus_4806#1 TCCTGTGTAGTTATGTACTGGTTTCCTTGTTGTATAATCCTGATGGGGTTTTTTATTTGA 146 ***************************************************** ****** consensus_4806#0 ACCCACAGGAGCATTTGGATCAGCAGCTGGCATGCGAGCCTGGATTTTCTGAACCTCTTC 299 consensus_4806#1 ACCCACAGGAGCATTTGGATCAGCAGCTGGCATGCGAGCCTGGATTTTCTGAACCTCTTC 206 ************************************************************ consensus_4806#0 TAAATCAATGGGTTCGATATCTAAGCCTGCTTGTGAAGGCTCTTGAGGGACAACCATTGA 359 consensus_4806#1 TAAATCAATGGGTTCGATATCTAAGCCTGCTTGTGAAGGCTCTTGAGGGACAACCATTGA 266 ************************************************************ consensus_4806#0 CGAATCATATGCATTATTCGCTAATTCTATTGTATTAGGTACTGATGAAACAAGCTGAAC 419 consensus_4806#1 CGAATCATATGCATTATTCGCTATTNCACTNNGTGCAAGCCGCAGCAGAAGTCCATANAC 326 *********************** * * * * * ** * ** consensus_4806#0 ACTT---TGCCCAACCACTGGTGCAAAGCCGGCAGCAGAAGTTCCT-------------- 462 consensus_4806#1 ACTTGAGTATTCTGAAACTGG-ATTTCGTCACGTTTAAATCTTCATTTACGAGCGATNCT 385 **** * * ***** * * * * *** * consensus_4806#0 ----------------------------- consensus_4806#1 GATAGAGGCTGCAAAGAATTGCATCAAAC 414 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||