These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4865#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 300 fasta sequence [GGTGTAGTCCTACTTTCGAACAGTCAGCAGTATTCGTTCACACATTGTTTGGTTCATATAAATTACAACCGAATCACAAACCAGAAGTATCTTCCGGACCACAAAATAATCTATATATAGCAAGCTCAAAGAAATCAATCGGTTTGTACAAGATCTTGACCAGAATATTAAATATCGGATCACAAGGCAAACAAATTTGGAGTTATATGTATATATCGTAATCCTGAATACTCAGTAAACAGCATTGATTGCTTGCTAATGGCTCAAGAAAAAGAGTCTCTTGTGGAGTCTCATTGGTCT] [+] EMBL CD059256 [GGTGTAGTCCTACTTTCGAACAGTCAGCAGTATTCGTTCACACATTGTTTGGTTCATATAAATTACAACCGAATCACAAACCAGAAGTATCTTCCGGACCACAAAATAATCTATATATAGCAAGCTCAAAGAAATCAATCGGTTTGTACAAGATCTTGACCAGAATATTAAATATCGGATCACAAGGCAAACAAATTTGGAGTTATATGTATATATCGTAATCCTGAATACTCAGTAAACAGCATTGATTGCTTGCTAATGGCTCAAGAAAAAGAGTCTCTTGTGGAGTCTCATTGGTCT] consensusID : consensus_4865#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 163 fasta sequence [AATCAATCGGTTTGTACAAGATCTTGACCAGAATATTAAATATCGGATCACAAGGCAAACAAATTTGGAGTTATATGTATATATCTGAATCCTGAATACTCATGAAACAGCATTGATTCGTTCGTAATGGCTCAAGAATTTGATGCTCTTCCTGTGGATGCTC] [+] EMBL AA952858 [AATCAATCGGTTTGTACAAGATCTTGACCAGAATATTAAATATCGGATCACAAGGCAAACAAATTTGGAGTTATATGTATATATCTGAATCCTGAATACTCATGAAACAGCATTGATTCGTTCGTAATGGCTCAAGAATTTGATGCTCTTCCTGTGGATGCTC] [+] EMBL SMAA98615 [AATCAATCGGTTTGTACAAGATCTTGACCAGAATATTAAATATCGGATCACAAGGCAAACAAATTTGGAGTTATATGTATATATCTGAATCCTGAATACTCATGAAACAGCATTGATTCGTTCGTAATGGCTCAAGAAAAAGATGCTCTTCCTGTGGATGCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4865#0 GGTGTAGTCCTACTTTCGAACAGTCAGCAGTATTCGTTCACACATTGTTTGGTTCATATA 60 consensus_4865#1 ------------------------------------------------------------ consensus_4865#0 AATTACAACCGAATCACAAACCAGAAGTATCTTCCGGACCACAAAATAATCTATATATAG 120 consensus_4865#1 ------------------------------------------------------------ consensus_4865#0 CAAGCTCAAAGAAATCAATCGGTTTGTACAAGATCTTGACCAGAATATTAAATATCGGAT 180 consensus_4865#1 ------------AATCAATCGGTTTGTACAAGATCTTGACCAGAATATTAAATATCGGAT 48 ************************************************ consensus_4865#0 CACAAGGCAAACAAATTTGGAGTTATATGTATATATCGTAATCCTGAATACTCAGTAAAC 240 consensus_4865#1 CACAAGGCAAACAAATTTGGAGTTATATGTATATATCTGAATCCTGAATACTCATGAAAC 108 ************************************* *************** **** consensus_4865#0 AGCATTGATTGCTTGCTAATGGCTCAAGAAAAAGAGTCTCTT---GTGGAGTCTCATTGG 297 consensus_4865#1 AGCATTGATTCGTTCGTAATGGCTCAAGAATTTGATGCTCTTCCTGTGGATGCTC----- 163 ********** ** ************** ** ***** ***** *** consensus_4865#0 TCT 300 consensus_4865#1 --- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||