cluster # 4887

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Schistosoma mansoni
cluster # 4887 cluster # 4887 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4887#0 length = 721 sequences # 2

consensus_4887#1 length = 437 sequences # 1

consensusID : consensus_4887#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 721
fasta sequence

                              [ATATACCGTCACAGATTCGAGATTTATTGGTTTACATTGCTCGTGAGGGAGTAGCTGTAACGGATTTGTTCAGAAGACCTGGAAACCAACAAGATATGAAAAAGATTATCTCTGACCTTGAAGCCGGGAGACCAATTAGATGGACAGATTACAACTTTTATACCCTTGCAAATATTGCCAAACGGTATTTGCTGCATATTGAGGGCGGGATTTTGGGTCCTGAATCTGAAGAGCAACTGCTTTCTACTCTTGACATTCCAGATGATCAAGCTCGCATCGAAGCAATGCACTGAACGGTCCTTCAAGTTTGGTGATACCGTCACTACGTCTACTGCCCTGGTATATGGTCTGATAGTTTCATCTTTCTGATTGACTAACTCAGTTTAGTGTTATGGTCATTTACAGCTTCAACTGAATCAAGTTCACAAATTCTAGCTATCGAGCATATCAACAGAGCCGTTGATATTGTTGCCACAATGTGGAGTCAGTTACTTACCAATGGCGTCCATACGAAGAAACTCGGAGATTCTGGTTTCGCACGTGCATGTGCAATAGGTATTACCAGTGTGATTGTTTCCCAACCAAGGCCTGTTTCAGCAGTTACTTGCTCTACTATTCGGCATCTGGTTTCGAATGATCTAACATACTGAAGTTAATGCTATGTCTGTGGAAGCTGTTGCTAAATCTGTTGCCGGGTCTGTTTTCCCCAGCCCCCCCCACC]

[+] EMBL CD165365             [ATATACCGTCACAGATTCGAGATTTATTGGTTTACATTGCTCGTGAGGGAGTAGCTGTAACGGATTTGTTCAGAAGACCTGGAAACCAACAAGATATGAAAAAGATTATCTCTGACCTTGAAGCCGGGAGACCAATTAGATGGACAGATTACAACTTTTATACCCTTGCAAATATTGCCAAACGGTATTTGCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD200548             [                                                                                                                                         AGATGGACAGATTACAACTTTTATACCCTTGCAAATATTGCCAAACGGTATTTGCTGCATATTGAGGGCGGGATTTTGGGTCCTGAATCTGAAGAGCAACTGCTTTCTACTCTTGACATTCCAGATGATCAAGCTCGCATCGAAGCAATGCACTGAACGGTCCTTCAAGTTTGGTGATACCGTCACTACGTCTACTGCCCTGGTATATGGTCTGATAGTTTCATCTTTCTGATTGACTAACTCAGTTTAGTGTTATGGTCATTTACAGCTTCAACTGAATCAAGTTCACAAATTCTAGCTATCGAGCATATCAACAGAGCCGTTGATATTGTTGCCACAATGTGGAGTCAGTTACTTACCAATGGCGTCCATACGAAGAAACTCGGAGATTCTGGTTTCGCACGTGCATGTGCAATAGGTATTACCAGTGTGATTGTTTCCCAACCAAGGCCTGTTTCAGCAGTTACTTGCTCTACTATTCGGCATCTGGTTTCGAATGATCTAACATACTGAAGTTAATGCTATGTCTGTGGAAGCTGTTGCTAAATCTGTTGCCGGGTCTGTTTTCCCCAGCCCCCCCCACC]




>consensus_4887#0
ATATACCGTCACAGATTCGAGATTTATTGGTTTACATTGCTCGTGAGGGAGTAGCTGTAA
CGGATTTGTTCAGAAGACCTGGAAACCAACAAGATATGAAAAAGATTATCTCTGACCTTG
AAGCCGGGAGACCAATTAGATGGACAGATTACAACTTTTATACCCTTGCAAATATTGCCA
AACGGTATTTGCTGCATATTGAGGGCGGGATTTTGGGTCCTGAATCTGAAGAGCAACTGC
TTTCTACTCTTGACATTCCAGATGATCAAGCTCGCATCGAAGCAATGCACTGAACGGTCC
TTCAAGTTTGGTGATACCGTCACTACGTCTACTGCCCTGGTATATGGTCTGATAGTTTCA
TCTTTCTGATTGACTAACTCAGTTTAGTGTTATGGTCATTTACAGCTTCAACTGAATCAA
GTTCACAAATTCTAGCTATCGAGCATATCAACAGAGCCGTTGATATTGTTGCCACAATGT
GGAGTCAGTTACTTACCAATGGCGTCCATACGAAGAAACTCGGAGATTCTGGTTTCGCAC
GTGCATGTGCAATAGGTATTACCAGTGTGATTGTTTCCCAACCAAGGCCTGTTTCAGCAG
TTACTTGCTCTACTATTCGGCATCTGGTTTCGAATGATCTAACATACTGAAGTTAATGCT
ATGTCTGTGGAAGCTGTTGCTAAATCTGTTGCCGGGTCTGTTTTCCCCAGCCCCCCCCAC
C

consensusID : consensus_4887#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 437
fasta sequence

                              [TGCTCGTGAGGGAGTAGCTGTAACGGATTTGTTCAGAAGACCTGGAAACCAACAAGATATGAAAAAGATTATCTCTGACCTTGAAGCCGGGAGACCAATTAGATGGACAGATTACAACTTTTATACCCTTGCAAATATTGCCAAACGGTATTTGCTGCATATTGAGGGCGGGATTTTGGGTCCTGAATCTGAAGAGCGACTGCTTTCTACTCTTGACATTCCAGATGATCAAGCTCGCATCGAAGCAATGCACTGGTTAGTATAATTCTGAAGATTCGTATCGTTTAATGAAACGTTGTGCTTTATGTCGTAGTGCGGTTCATAGTAATATCGTTTTCCTAATCGTTCCAGCAGGCGTTTATGCAAAACCACGGGCTCTAGTTAATGTTTATCTGTCAGTCTTCAGGCATAGATACCAATCCTGCTTTTTTAATAGT]

[+] EMBL CD161295             [TGCTCGTGAGGGAGTAGCTGTAACGGATTTGTTCAGAAGACCTGGAAACCAACAAGATATGAAAAAGATTATCTCTGACCTTGAAGCCGGGAGACCAATTAGATGGACAGATTACAACTTTTATACCCTTGCAAATATTGCCAAACGGTATTTGCTGCATATTGAGGGCGGGATTTTGGGTCCTGAATCTGAAGAGCGACTGCTTTCTACTCTTGACATTCCAGATGATCAAGCTCGCATCGAAGCAATGCACTGGTTAGTATAATTCTGAAGATTCGTATCGTTTAATGAAACGTTGTGCTTTATGTCGTAGTGCGGTTCATAGTAATATCGTTTTCCTAATCGTTCCAGCAGGCGTTTATGCAAAACCACGGGCTCTAGTTAATGTTTATCTGTCAGTCTTCAGGCATAGATACCAATCCTGCTTTTTTAATAGT]




>consensus_4887#1
TGCTCGTGAGGGAGTAGCTGTAACGGATTTGTTCAGAAGACCTGGAAACCAACAAGATAT
GAAAAAGATTATCTCTGACCTTGAAGCCGGGAGACCAATTAGATGGACAGATTACAACTT
TTATACCCTTGCAAATATTGCCAAACGGTATTTGCTGCATATTGAGGGCGGGATTTTGGG
TCCTGAATCTGAAGAGCGACTGCTTTCTACTCTTGACATTCCAGATGATCAAGCTCGCAT
CGAAGCAATGCACTGGTTAGTATAATTCTGAAGATTCGTATCGTTTAATGAAACGTTGTG
CTTTATGTCGTAGTGCGGTTCATAGTAATATCGTTTTCCTAATCGTTCCAGCAGGCGTTT
ATGCAAAACCACGGGCTCTAGTTAATGTTTATCTGTCAGTCTTCAGGCATAGATACCAAT
CCTGCTTTTTTAATAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4887#0      ATATACCGTCACAGATTCGAGATTTATTGGTTTACATTGCTCGTGAGGGAGTAGCTGTAA 60
consensus_4887#1      -------------------------------------TGCTCGTGAGGGAGTAGCTGTAA 23
                                                           ***********************

consensus_4887#0      CGGATTTGTTCAGAAGACCTGGAAACCAACAAGATATGAAAAAGATTATCTCTGACCTTG 120
consensus_4887#1      CGGATTTGTTCAGAAGACCTGGAAACCAACAAGATATGAAAAAGATTATCTCTGACCTTG 83
                      ************************************************************

consensus_4887#0      AAGCCGGGAGACCAATTAGATGGACAGATTACAACTTTTATACCCTTGCAAATATTGCCA 180
consensus_4887#1      AAGCCGGGAGACCAATTAGATGGACAGATTACAACTTTTATACCCTTGCAAATATTGCCA 143
                      ************************************************************

consensus_4887#0      AACGGTATTTGCTGCATATTGAGGGCGGGATTTTGGGTCCTGAATCTGAAGAGCAACTGC 240
consensus_4887#1      AACGGTATTTGCTGCATATTGAGGGCGGGATTTTGGGTCCTGAATCTGAAGAGCGACTGC 203
                      ****************************************************** *****

consensus_4887#0      TTTCTACTCTTGACATTCCAGATGATCAAGCTCGCATCGAAGCAATGCACTGAACGGTCC 300
consensus_4887#1      TTTCTACTCTTGACATTCCAGATGATCAAGCTCGCATCGAAGCAATGCACTGGTTAGTAT 263
                      ****************************************************    **  

consensus_4887#0      TTCAAGTTTGGTGATAC-CGTCACTACGTCTACTGCCCTGGTATATGGTCTGATA-GTTT 358
consensus_4887#1      ---AATTCTGAAGATTCGTATCGTTTAATGAAACGTTGTGCTTTATGTCGTAGTGCGGTT 320
                         ** * **  *** *   **  *   *  *  *   ** * ****   *  *  * **

consensus_4887#0      CATCTT--TCTGATTGACTAACTCAGTTTAGTGTTATGGTCATTTACAGCTTCAACTGAA 416
consensus_4887#1      CATAGTAATATCGTTTTCCTAATCGTTCCAGCAG-GCGTTTATGCAAAACC---ACGGGC 376
                      ***  *  * *  **  *  * **  *  **      * * **  * * *    ** *  

consensus_4887#0      TCAAGTTCACAAATTCTAGCTATCGAGCATATCAACAGAGCCGTTGATATTGTTGCCACA 476
consensus_4887#1      TCTAGTTAATG---TTTATCTGTC-AGTCTTCAGGCATAGATACCAATCCTGCTTTTTTA 432
                      ** **** *     * ** ** ** **  *     ** **      **  ** *     *

consensus_4887#0      ATGTGGAGTCAGTTACTTACCAATGGCGTCCATACGAAGAAACTCGGAGATTCTGGTTTC 536
consensus_4887#1      ATAGT------------------------------------------------------- 437
                      **                                                          

consensus_4887#0      GCACGTGCATGTGCAATAGGTATTACCAGTGTGATTGTTTCCCAACCAAGGCCTGTTTCA 596
consensus_4887#1      ------------------------------------------------------------
                                                                                  

consensus_4887#0      GCAGTTACTTGCTCTACTATTCGGCATCTGGTTTCGAATGATCTAACATACTGAAGTTAA 656
consensus_4887#1      ------------------------------------------------------------
                                                                                  

consensus_4887#0      TGCTATGTCTGTGGAAGCTGTTGCTAAATCTGTTGCCGGGTCTGTTTTCCCCAGCCCCCC 716
consensus_4887#1      ------------------------------------------------------------
                                                                                  

consensus_4887#0      CCACC 721
consensus_4887#1      -----