cluster # 4900

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Schistosoma mansoni
cluster # 4900 cluster # 4900 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4900#0 length = 238 sequences # 2

consensus_4900#1 length = 233 sequences # 1

consensusID : consensus_4900#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 238
fasta sequence

                              [AAGCTTATCTTTGTATGTATACAATCTGTAAACCATTTTTATCTTTTTATTTGTTTGTTCCTTGTATGTGACAGTGTTGTTGTTACTATGATTATGATTATTACCCCCCCCTCTCCCTACCAAGTTTTTGATACTTGTAATAATACGTATTTTTCACTGTTCTTTCACTATATAAAAAAATTTATTCGTCTTCACAAATACATGAATATATATACTATTTATTCATTATTATTCCCTT]

[+] EMBL CD164053             [AAGCTTATCTTTGTATGTATACAATCTGTAAACCATTTTTATCTTTTTATTTGTTTGTTCCTTGTATGTGACAGTGTTGTTGTTACTATGATTATGATTATTACCCCCCCCTCTCCCTACCAAGTTTTTGATACTTGTAATAATACGTATTTTTCACTGTTCTTTCACTATATAAAAAAATTTATTCGTCTTCACAAATACATGAATATATATACTATTTATTCATTATTATTCCCTT]
[+] EMBL CD163954             [AAGCTTATCTTTGTATGTATACAATCTGTAAACCATTTTTATCTTTTTATTTGTTTGTTCCTTGTATGTGACAGTGTTGTTGTTACTATGATTATGATTATTACCCCCCCCTCTCCCTACCAAGTTTTTGATACTTGTAATAATACGTATTTTTCACTGTTCTTTCACTATATAAAAAAATTTATTCGTCTTCACAAATACATGAATATATATACTATTTATTCATTATTATTCCCT ]




>consensus_4900#0
AAGCTTATCTTTGTATGTATACAATCTGTAAACCATTTTTATCTTTTTATTTGTTTGTTC
CTTGTATGTGACAGTGTTGTTGTTACTATGATTATGATTATTACCCCCCCCTCTCCCTAC
CAAGTTTTTGATACTTGTAATAATACGTATTTTTCACTGTTCTTTCACTATATAAAAAAA
TTTATTCGTCTTCACAAATACATGAATATATATACTATTTATTCATTATTATTCCCTT

consensusID : consensus_4900#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 233
fasta sequence

                              [AATCAAGCTTATCTTTGTATGTATACAATCTGTAAACCATTTTTATCTTTTTATTTGTTTGTTCCTTGTATGTGACAGTGTTGTTGTTACTATGATTATGATTATTACCCCCCCCTCTCCCTACCAAGTTTTTGATACTTGTAATAATATGTATTCTTCACTGTTCTTTCACTATATAAAAAAATTTTTTCGTCTTACAGAAGGCAAAGTGGCAATTACGCATAGTTTCCCGA]

[-] EMBL CD124573             [AATCAAGCTTATCTTTGTATGTATACAATCTGTAAACCATTTTTATCTTTTTATTTGTTTGTTCCTTGTATGTGACAGTGTTGTTGTTACTATGATTATGATTATTACCCCCCCCTCTCCCTACCAAGTTTTTGATACTTGTAATAATATGTATTCTTCACTGTTCTTTCACTATATAAAAAAATTTTTTCGTCTTACAGAAGGCAAAGTGGCAATTACGCATAGTTTCCCGA]




>consensus_4900#1
AATCAAGCTTATCTTTGTATGTATACAATCTGTAAACCATTTTTATCTTTTTATTTGTTT
GTTCCTTGTATGTGACAGTGTTGTTGTTACTATGATTATGATTATTACCCCCCCCTCTCC
CTACCAAGTTTTTGATACTTGTAATAATATGTATTCTTCACTGTTCTTTCACTATATAAA
AAAATTTTTTCGTCTTACAGAAGGCAAAGTGGCAATTACGCATAGTTTCCCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4900#0      ----AAGCTTATCTTTGTATGTATACAATCTGTAAACCATTTTTATCTTTTTATTTGTTT 56
consensus_4900#1      AATCAAGCTTATCTTTGTATGTATACAATCTGTAAACCATTTTTATCTTTTTATTTGTTT 60
                          ********************************************************

consensus_4900#0      GTTCCTTGTATGTGACAGTGTTGTTGTTACTATGATTATGATTATTACCCCCCCCTCTCC 116
consensus_4900#1      GTTCCTTGTATGTGACAGTGTTGTTGTTACTATGATTATGATTATTACCCCCCCCTCTCC 120
                      ************************************************************

consensus_4900#0      CTACCAAGTTTTTGATACTTGTAATAATACGTATTTTTCACTGTTCTTTCACTATATAAA 176
consensus_4900#1      CTACCAAGTTTTTGATACTTGTAATAATATGTATTCTTCACTGTTCTTTCACTATATAAA 180
                      ***************************** ***** ************************

consensus_4900#0      AAAATTTATTCGTCTTCACAAATACATGAATATATATACTATTTATTCATTATTATTCCC 236
consensus_4900#1      AAAATTTTTTCGTCTTACAGAAGGCAAAGTGGCAATTACGCATAGTTTCCCGA------- 233
                      ******* ********    **  **       *  ***   *  **             

consensus_4900#0      TT 238
consensus_4900#1      --