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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4923#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 608 fasta sequence
[TCTTGTGATTTGTTGCATGATGTGCTATCATAATTTTCTTATACCTTACGAGTAGTGTACAGTTGGTCGTCGTTTCCTTACTTCAGTATATGATAGTACTATAGTCGCCAAAAAACTTGGTGTATCATATCAAAATGATGACTATTCGTCTGAGTACCCATGGATGGTGTGTGCTGATTATAAGCATTTTGGTTATCTTTCTGTACTATCTGTCGTCATTTAATCCTGTCGGACATCTTAAAGGGGAAGTTACCAGTGTTCGAAGATTGTTAACTCGCTGCATACATCTTTCCGAAGAAGCTGGTGGTCTTATAAAATTTATAAGTCTGAAGCATAACCTTAATTCACGTACCAAACACGGGGGTATTTTGAAGCAAGAGCCTTTGACGGATGCGGACCTGGGATCTCATCAAATAATCGTGTCGGGTTTGGCCTCGGCCTTTCCAGAGCTACTAGTTCGCTCCGAGGAGCATGAATTACCAACACACCGTCTGCTTGATTATAAAGAAAGTGTTTATCATTCGGATTTTCAAAGTTCTCTTCCTAATGATGATCTCTTTGTGCCTATTACAGATTTGGTAATATGGGTAGATCCTTTAGACGGAACT]
[-] EMBL CD199879 [TCTTGTGATTTGTTGCATGATGTGCTATCATAATTTTCTTATACCTTACGAGTAGTGTACAGTTGGTCGTCGTTTCCTTACTTCAGTATATGATAGTACTATAGTCGCCAAAAAACTTGGTGTATCATATCAAAATGATGACTATTCGTCTGAGTACCCATGGATGGTGTGTGCTGATTATAAGCATTTTGGTTATCTTTCTGTACTATCTGTCGTCA ]
[+] EMBL CD078444 [ TGCTATCATAATTTTCTTATACCTTACGAGTAGTGTACAGTTGGTCGTCGTTTCCTTACTTCAGTATATGATAGTACTATAGTCGCCAAAAAACTTGGTGTATCATATCAAAATGATGACTATTCGTCTGAGTACCCATGGATGGTGTGTGCTGATTATAAGCATTTTGGTTATCTTTCTGTACTATCTGTCGTCATTTAATCCTGTCGGACATCTTAAAGGGGAAGTTACCAGTGTTCGAAGATTGTTAACTCGCTGCATACATCTTTCCGAAGAAGCTGGTGGTCTTATAAAATTTATAAGTCTGAAGCATAACCTTAATTCACGTACCAAACACGGGGGTATTTTGAAGCAAGAGCCTTTGACGGATGCGGACCTGGGATCTCATCAAATAATCGTGTCGGGTTTGGCCTCGGCCTTTCCAGAGCTACTAGTTCGCTCCGAGGAGCATGAATTACCAACACACCGTCTGCTTGATTATAAAGAAAGTGTTTATCATTCGGATTTTCAAAGTTCTCTTCCTAATGATGATCTCTTTGTGCCTATTACAGATTTGGTAATATGGGTAGATCCTTTAGACGGAACT]
consensusID : consensus_4923#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 295 fasta sequence
[TTTTATTATGTTTTTAATGGAGTTTGTTCTCTGAGCTGAATGGTCCGTCGCAAGTTGCACTTCTACGACCATTCACGGGGGTATTTTGAAGCAAGAGCCTTTGACGGATGCGGACCTGGGATCTCATCAAATAATCGTGTCGGGTTTGGCCTCGGCCTTTCCAGAGCTACTAGTTCGCTCCGAGGAGCATGAATTACCATCACACCGTCTGCTTGATTATCAAGAAAGTGTTTATCATTCGGATTTTCAAAGTTCTCTTCCTAATGATGATCTCTTTGTGCCTATTACAGATTTG]
[+] EMBL CD166850 [TTTTATTATGTTTTTAATGGAGTTTGTTCTCTGAGCTGAATGGTCCGTCGCAAGTTGCACTTCTACGACCATTCACGGGGGTATTTTGAAGCAAGAGCCTTTGACGGATGCGGACCTGGGATCTCATCAAATAATCGTGTCGGGTTTGGCCTCGGCCTTTCCAGAGCTACTAGTTCGCTCCGAGGAGCATGAATTACCATCACACCGTCTGCTTGATTATCAAGAAAGTGTTTATCATTCGGATTTTCAAAGTTCTCTTCCTAATGATGATCTCTTTGTGCCTATTACAGATTTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4923#0 TCTTGTGATTTGTTGCATGATGTGCTATCATAATTTTCTTATACCTTACGAGTAGTGTAC 60
consensus_4923#1 ------------------------------------------------------------
consensus_4923#0 AGTTGGTCGTCGTTTCCTTACTTCAGTATATGATAGTACTATAGTCGCCAAAAAACTTGG 120
consensus_4923#1 ------------------------------------------------------------
consensus_4923#0 TGTATCATATCAAAATGATGACTATTCGTCTGAGTACCCATGGATGGTGTGTGCTGATTA 180
consensus_4923#1 ------------------------------------------------------------
consensus_4923#0 TAAGCATTTTGGTTATCTTTCTGTACTATCTGTCGTCATTTAATCCTGTCGGACATCTTA 240
consensus_4923#1 ------------------------------------------------------------
consensus_4923#0 AAGGGGAAGTTACCAGTGTTCGAAGATTGTTAACTCGCTGCATACATCTTTCCGAAGAAG 300
consensus_4923#1 -------------------------------------TTTTAT-TATGTTTTTAATGGAG 22
* ** ** *** * * **
consensus_4923#0 CTGGTGGTCTTATAAAATTTATAAGTCTGAAGCATAACCTTAATTCACGTACCAAACACG 360
consensus_4923#1 TTTGTTCTCT----GAGCTGAATGGTCCGTCGCA-AGTTGCACTTCTACGACCATTCACG 77
* ** *** * * * *** * *** * * *** **** ****
consensus_4923#0 GGGGTATTTTGAAGCAAGAGCCTTTGACGGATGCGGACCTGGGATCTCATCAAATAATCG 420
consensus_4923#1 GGGGTATTTTGAAGCAAGAGCCTTTGACGGATGCGGACCTGGGATCTCATCAAATAATCG 137
************************************************************
consensus_4923#0 TGTCGGGTTTGGCCTCGGCCTTTCCAGAGCTACTAGTTCGCTCCGAGGAGCATGAATTAC 480
consensus_4923#1 TGTCGGGTTTGGCCTCGGCCTTTCCAGAGCTACTAGTTCGCTCCGAGGAGCATGAATTAC 197
************************************************************
consensus_4923#0 CAACACACCGTCTGCTTGATTATAAAGAAAGTGTTTATCATTCGGATTTTCAAAGTTCTC 540
consensus_4923#1 CATCACACCGTCTGCTTGATTATCAAGAAAGTGTTTATCATTCGGATTTTCAAAGTTCTC 257
** ******************** ************************************
consensus_4923#0 TTCCTAATGATGATCTCTTTGTGCCTATTACAGATTTGGTAATATGGGTAGATCCTTTAG 600
consensus_4923#1 TTCCTAATGATGATCTCTTTGTGCCTATTACAGATTTG---------------------- 295
**************************************
consensus_4923#0 ACGGAACT 608
consensus_4923#1 --------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||