These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_495#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 451 fasta sequence [TGGTATTGTGACATAACTGGGATGATATGGAGAAGATATGGCACCACACATTCTACAGCGAGTTGCGAGTGGCTCCAGAGGAACACCCAGTGTTGTTGACAGAAGCTCCACTGAACCCGAAAGCCAATCGTGAGAAGATGACACAGATCATGTTTGAGACGTTTAATGTGCCAGCTATGTATGTTGCTATTCAGGCGGTGTTGTCACTGTATGCATCTGGTCGTACAACTGGTATAGTGTTGGACTCGGGTGATGGTGTGACCCACACAGTTCCGATCTATGAAGGTTATGCATTGCCTCATGCGATTTTGCGTCTGGACCTTGCTGGTAGAGATCTTACCGACTATATGATGAAGATCTTGACTGAGAGAGGTTACAGTTTTACTACTACTGCAGAACGTGAAATTGTGCGAGATATAAAGGAGAAGCTTTGTTACGTTGCTTTGGATTT] [+] EMBL CD060433 [TGGTATTGTGACATAACTGGGATGATATGGAGAAGATATGGCACCACACATTCTACAGCGAGTTGCGAGTGGCTCCAGAGGAACACCCAGTGTTGTTGACAGAAGCTCCACTGAACCCGAAAGCCAATCGTGAGAAGATGACACAGATCATGTTTGAGACGTTTAATGTGCCAGCTATGTATGTTGCTATTCAGGCGGTGTTGTCACTGTATGCATCTGGTCGTACAACTGGTATAGTGTTGGACTCGGGTGATGGTGTGACCCACACAGTTCCGATCTATGAAGGTTATGCATTGCCTCATGCGATTTTGCGTCTGGACCTTGCTGGTAGAGATCTTACCGACTATATGATGAAGATCTTGACTGAGAGAGGTTACAGTTTTACTACTACTGCAGAACGTGAAATTGTGCGAGATATAAAGGAGAAGCTTTGTTACGTTGCTTTGGATTT] consensusID : consensus_495#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 346 fasta sequence [AGCACATTATCATTATCTATATGTGGAGCTAGATTTCTATATATTTTATCTATTCAATCTTATCAGAAAATGCCAGGTCCGTGGATTATAATTGAGTTTTCTGTGCTACTAATATGCACCTTCTTTTGGTTTATAACGCTGATCGTTGCAGCGGCTCATCATTCAAAAGGTGCTGGTGCTATAGCTGCGGCTGTATTTTCTGCAATCGCTCTTGCGGTTTACATCACAGAATTAGCCACTCGATTCCGATGTGAACGCACGAGGGAATGGCTTCATCATCACAATGACTGGTGTAATGACTACGCATGCAACACATGGTCCGCCTACATTTGCTCAACCCACCCAT] [+] EMBL CD068293 [AGCACATTATCATTATCTATATGTGGAGCTAGATTTCTATATATTTTATCTATTCAATCTTATCAGAAAATGCCAGGTCCGTGGATTATAATTGAGTTTTCTGTGCTACTAATATGCACCTTCTTTTGGTTTATAACGCTGATCGTTGCAGCGGCTCATCATTCAAAAGGTGCTGGTGCTATAGCTGCGGCTGTATTTTCTGCAATCGCTCTTGCGGTTTACATCACAGAATTAGCCACTCGATTCCGATGTGAACGCACGAGGGAATGGCTTCATCATCACAATGACTGGTGTAATGACTACGCATGCAACACATGGTCCGCCTACATTTGCTCAACCCACCCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_495#0 TGGTATTGTGACATAACTGGGATGATATGGAGAAGATATGGCACCACACATTCTACAGCG 60 consensus_495#1 --------------------------------------------------------AGCA 4 *** consensus_495#0 AGTTGCGAGTGGCTCCAGAGGAACACCCAGTGTTGTTGACAGAAGCTCCACTGAACCCGA 120 consensus_495#1 CATTATCATTA--TCTATATGTGGAGCTAGATTTCTATATATTTTATCTATTCAATCTTA 62 ** * * ** * * * * * ** ** * * * ** * * ** * * consensus_495#0 AAGCCAATCGTGAGAAGATGACACAGATCATGTTTGAGACGTTTAATGTGCCAGCTATGT 180 consensus_495#1 TCAGAAAATGCCAGGT----CCGTGGATTATAATTGAG---TTTTCTGTGCTACTAATAT 115 ** * ** * *** ** ***** *** ***** * ** * consensus_495#0 ATGTTGCTATTCAG---GCGGTGTTG-TCACTGTATGCATCTGGTCGTACAACTGGTA-T 235 consensus_495#1 GCACCTTCTTTTGGTTTATAACGCTGATCGTTGCA-GCGGCTCATCATTCAAAAGGTGCT 174 ** * * ** ** ** * ** ** ** * *** *** * consensus_495#0 AGTGTTGGACTCGGGTGATGGTGTGACCCACACAGTTCCGATCTATGAAGGTTATGCATT 295 consensus_495#1 GGTGCTATAGCT--GCGGCTGTATTTTCTGCAATCGCTCTTGCGGTTTACATCACAGAAT 232 *** * * * * ** * * ** * * * * * * * * consensus_495#0 GCCTCATGCGATTTTGCGTCTGGACCTTGCTGGTAGAGATCTTACCGACTATATGATGAA 355 consensus_495#1 TAGCCACTCGATTCCG-ATGTGAACGCACGAGGGAATGGCTTCATCATCACAATGACTGG 291 ** ***** * * ** ** ** * * * * * * **** consensus_495#0 GATCTTGACTGAGAG---AGGTTACAGTTTTACTACTACTGCAGAACGTGAAATTGTGCG 412 consensus_495#1 TGTAATGACTACGCATGCAACACATGGTCCGCCTACATTTGCTCAACCCACCCAT----- 346 * ***** * * * ** **** *** *** * consensus_495#0 AGATATAAAGGAGAAGCTTTGTTACGTTGCTTTGGATTT 451 consensus_495#1 --------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||