These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4955#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 304 fasta sequence [CGGTTTCTGTCGGGAAAGGTGGGGATCAAGATCTTGTTATAACATATATATCTCGAGGTCGACAAGCTTTTTAAATCATGAAGGCCTAATGTAGAGACTGCTAGGAAAAATGGATTCAGCGAGCGATGACACGCATGCAACCCCGTGAACACTAATATCGATGGGATTAGGAGCACGGTGGCAGTCAGCTGATTCGCTGCCAAAGTGCGACTCAAATGCTGGACGCAACGAGCGACTTTTTTGAAACGGGCCCGGTGCCCCAGACCGCGTATTCCGAGAGCCACGACAACGTCGCGCCTTGGAG] [+] EMBL AW186621 [CGGTTTCTGTCGGGAAAGGTGGGGATCAAGATCTTGTTATAACATATATATCTCGAGGTCGACAAGCTTTTTAAATCATGAAGGCCTAATGTAGAGACTGCTAGGAAAAATGGATTCAGCGAGCGATGACACGCATGCAACCCCGTGAACACTAATATCGATGGGATTAGGAGCACGGTGGCAGTCAGCTGATTCGCTGCCAAAGTGCGACTCAAATGCTGGACGCAACGAGCGACTTTTTTGAAACGGGCCCGGTGCCCCAGACCGCGTATTCCGAGAGCCACGACAACGTCGCGCCTTGGAG] consensusID : consensus_4955#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 249 fasta sequence [CGGTTTCTGTCGGGAAAGGTGGGGATCAAGATCTTGTTATAACATATTATCTCGAGGTCGACAAGCTTTTTAAATCATGAAGGCCTAATGTAGAAGTACAGTCGCTAATGCCCGTCGCTCGCTTGCGTGATCGAGCCGCGTGGTAGGGCAGTATTACCTGGTAGGTCCGGGCTCTGGCTTGTCCAGCTGGTTGAATGGAATCGAACAGCCGTCTTAATCCGGAATTTTGACGAAGGCACCATATCCGAG] [+] EMBL AW186623 [CGGTTTCTGTCGGGAAAGGTGGGGATCAAGATCTTGTTATAACATATTATCTCGAGGTCGACAAGCTTTTTAAATCATGAAGGCCTAATGTAGAAGTACAGTCGCTAATGCCCGTCGCTCGCTTGCGTGATCGAGCCGCGTGGTAGGGCAGTATTACCTGGTAGGTCCGGGCTCTGGCTTGTCCAGCTGGTTGAATGGAATCGAACAGCCGTCTTAATCCGGAATTTTGACGAAGGCACCATATCCGAG] consensusID : consensus_4955#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 192 fasta sequence [CCGGTTTCTGTCGGGAAAGGTGGGGATCAAGATCTTGTTATAACATATTTATCTCGAGGTCGACAAGCTTTTTAAATCATGAAGGCCTAATGTAGAACTCACGAGTTTGCGGTAGCATCACGGAACGGCTAACCACTCAATCGACAGGCGGAACGAATAATCTGATAAACGATGTTCACCATTACCCCTGAC] [+] EMBL AW186620 [CCGGTTTCTGTCGGGAAAGGTGGGGATCAAGATCTTGTTATAACATATTTATCTCGAGGTCGACAAGCTTTTTAAATCATGAAGGCCTAATGTAGAACTCACGAGTTTGCGGTAGCATCACGGAACGGCTAACCACTCAATCGACAGGCGGAACGAATAATCTGATAAACGATGTTCACCATTACCCCTGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4955#1 -CGGTTTCTGTCGGGAAAGGTGGGGATCAAGATCTTGTTATAACATATT-ATCTCGAGGT 58 consensus_4955#2 CCGGTTTCTGTCGGGAAAGGTGGGGATCAAGATCTTGTTATAACATATTTATCTCGAGGT 60 consensus_4955#0 -CGGTTTCTGTCGGGAAAGGTGGGGATCAAGATCTTGTTATAACATATATATCTCGAGGT 59 *********************************************** ********** consensus_4955#1 CGACAAGCTTTTTAAATCATGAAGGCCTAATGTAGAAGT-ACAG--TCGCTAATGC-CCG 114 consensus_4955#2 CGACAAGCTTTTTAAATCATGAAGGCCTAATGTAGAACTCACGAGTTTGCGGTAGCATCA 120 consensus_4955#0 CGACAAGCTTTTTAAATCATGAAGGCCTAATGTAGAGACTGCTAG-GAAAAATGGATTCA 118 ************************************ * * * consensus_4955#1 TCGCTCGCTTGCGTGATCG-AGCCGCGTGGT-----AGGGCAGTATTACCTGGTAGGTCC 168 consensus_4955#2 CGGAACGGCTAACCACTCA-ATCGACA-GGC-----GGAACGA-ATAATCTGATAAA-CG 171 consensus_4955#0 GCGAGCGATGACACGCATGCAACCCCGTGAACACTAATATCGATGGGATTAGGAGCACGG 178 * ** * * * * * * * consensus_4955#1 GGGCTCTGGCTTGTCCAGCTGGTTGAATG-GAATCGAACAGCCGTCTTAATCCGGAATTT 227 consensus_4955#2 ATGTTCACCATTACCC--CTGAC------------------------------------- 192 consensus_4955#0 TGGCAGTCAGCTGATTCGCTGCCAAAGTGCGACTCAAATGCTGGACGCAACGAGCGACTT 238 * * *** consensus_4955#1 TGACGAA---GGCACCATATCCGAG----------------------------------- 249 consensus_4955#2 ------------------------------------------------------------ consensus_4955#0 TTTTGAAACGGGCCCGGTGCCCCAGACCGCGTATTCCGAGAGCCACGACAACGTCGCGCC 298 consensus_4955#1 ------ consensus_4955#2 ------ consensus_4955#0 TTGGAG 304 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||