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Schistosoma mansoni
cluster # 496 cluster # 496       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_496#0 length = 645 sequences # 1  
consensus_496#1 length = 518 sequences # 1  

consensusID : consensus_496#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 645
fasta sequence
                              [ATAAGTGTAAATAGTTATGCAATTTTATTAATTATTCCTGATTTACAAATTTCTCTAAATTTTCAATGTCCGTTCTAATTGTATCATCATCTGGTTGAAGTTTTTGTGCAGCTCTGTATTCGATAAGTCCTTCTTTGTATAATTGTAGATTACAAAATGCTGCTCCACGCCTAATATGTGCACGCACACGTGATTTTAAATTTTGTGCTACAGGCGGTACACAAAGATCTAGTGCCATTGAACTATCTTCTAGAGCCTTAAAATAATTCCGCAATTGTAAGTGACATGCAGCTCGATTCGAATAAGCCGAATGTAATTTAGGATTTTGTGTTATAGCTTCTGTATATGCAATGACAGCAGCTTCATAGTCTCCAGCTTGAAATAATGAGTCTCCTTTTTTGCGTAACCATATAGGATCTAGTTCATTCATGGACAAGTCATCAGGCACCACACGGTCCAGTAATTTCCTTCTATATTCGGCTTGTTTATTCAGCCACTCGTCCTCAGCTTGTTTTGTTGACTCTCGTTCAGGTGTAGGAAATACTCTAGGTGTAAATTTAACTTCGATTGTAGATGAAGTCCTCACCGGCAAATCTATTGGTTTCTCATAAATGCTAAACGTTGTTGGATATCCTTATTTAATTC]

[+] EMBL CD074841             [ATAAGTGTAAATAGTTATGCAATTTTATTAATTATTCCTGATTTACAAATTTCTCTAAATTTTCAATGTCCGTTCTAATTGTATCATCATCTGGTTGAAGTTTTTGTGCAGCTCTGTATTCGATAAGTCCTTCTTTGTATAATTGTAGATTACAAAATGCTGCTCCACGCCTAATATGTGCACGCACACGTGATTTTAAATTTTGTGCTACAGGCGGTACACAAAGATCTAGTGCCATTGAACTATCTTCTAGAGCCTTAAAATAATTCCGCAATTGTAAGTGACATGCAGCTCGATTCGAATAAGCCGAATGTAATTTAGGATTTTGTGTTATAGCTTCTGTATATGCAATGACAGCAGCTTCATAGTCTCCAGCTTGAAATAATGAGTCTCCTTTTTTGCGTAACCATATAGGATCTAGTTCATTCATGGACAAGTCATCAGGCACCACACGGTCCAGTAATTTCCTTCTATATTCGGCTTGTTTATTCAGCCACTCGTCCTCAGCTTGTTTTGTTGACTCTCGTTCAGGTGTAGGAAATACTCTAGGTGTAAATTTAACTTCGATTGTAGATGAAGTCCTCACCGGCAAATCTATTGGTTTCTCATAAATGCTAAACGTTGTTGGATATCCTTATTTAATTC]


>consensus_496#0 ATAAGTGTAAATAGTTATGCAATTTTATTAATTATTCCTGATTTACAAATTTCTCTAAAT TTTCAATGTCCGTTCTAATTGTATCATCATCTGGTTGAAGTTTTTGTGCAGCTCTGTATT CGATAAGTCCTTCTTTGTATAATTGTAGATTACAAAATGCTGCTCCACGCCTAATATGTG CACGCACACGTGATTTTAAATTTTGTGCTACAGGCGGTACACAAAGATCTAGTGCCATTG AACTATCTTCTAGAGCCTTAAAATAATTCCGCAATTGTAAGTGACATGCAGCTCGATTCG AATAAGCCGAATGTAATTTAGGATTTTGTGTTATAGCTTCTGTATATGCAATGACAGCAG CTTCATAGTCTCCAGCTTGAAATAATGAGTCTCCTTTTTTGCGTAACCATATAGGATCTA GTTCATTCATGGACAAGTCATCAGGCACCACACGGTCCAGTAATTTCCTTCTATATTCGG CTTGTTTATTCAGCCACTCGTCCTCAGCTTGTTTTGTTGACTCTCGTTCAGGTGTAGGAA ATACTCTAGGTGTAAATTTAACTTCGATTGTAGATGAAGTCCTCACCGGCAAATCTATTG GTTTCTCATAAATGCTAAACGTTGTTGGATATCCTTATTTAATTC



consensusID : consensus_496#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 518
fasta sequence
                              [NNNNNNNNNNNNNNCAGGCACCACACGGTCCAGTAATTTCCTTCTATATTCGGCTTGTTTATTCAGCCACTCGTCCTCAGCTTGTTTTGTTGACTCTCGTTCAGGTGTAGGAAATACTCTAGGTGTAAATTTAACTTCGATTGTAGATGAAGTCCAATAAATGCTAAACGTTGTTGGATATCCTTATTTAATTCCATGTTGTTTTCTTCACCAATGGTTTTCATCATATATTGTTTAGAAAATCTTCGGGCTTCTGCAATTTTATTTTGCATCTCATTTTCATTTACAAACTCGTTTATTGCTTGCCTGCTAGCCTGCTCTTTTTCAAGTCTGATTTTTTCACGAGATACATTCTCTAATTTCATAATCTGTTCTAATGCGTATTTTTTACCTCTTACATCCTCATTTCGCGTTCTTGATGTTCAAGTATAGCATTTTGCTTTATTTGTAACAGACGTTTTCTATCCTCTGAAGGGTTGATTAATCTGTAAATATTAAGCATCTTAATTCTTAATCCT]

[-] EMBL CD081016             [NNNNNNNNNNNNNNCAGGCACCACACGGTCCAGTAATTTCCTTCTATATTCGGCTTGTTTATTCAGCCACTCGTCCTCAGCTTGTTTTGTTGACTCTCGTTCAGGTGTAGGAAATACTCTAGGTGTAAATTTAACTTCGATTGTAGATGAAGTCCAATAAATGCTAAACGTTGTTGGATATCCTTATTTAATTCCATGTTGTTTTCTTCACCAATGGTTTTCATCATATATTGTTTAGAAAATCTTCGGGCTTCTGCAATTTTATTTTGCATCTCATTTTCATTTACAAACTCGTTTATTGCTTGCCTGCTAGCCTGCTCTTTTTCAAGTCTGATTTTTTCACGAGATACATTCTCTAATTTCATAATCTGTTCTAATGCGTATTTTTTACCTCTTACATCCTCATTTCGCGTTCTTGATGTTCAAGTATAGCATTTTGCTTTATTTGTAACAGACGTTTTCTATCCTCTGAAGGGTTGATTAATCTGTAAATATTAAGCATCTTAATTCTTAATCCT]


>consensus_496#1 NNNNNNNNNNNNNNCAGGCACCACACGGTCCAGTAATTTCCTTCTATATTCGGCTTGTTT ATTCAGCCACTCGTCCTCAGCTTGTTTTGTTGACTCTCGTTCAGGTGTAGGAAATACTCT AGGTGTAAATTTAACTTCGATTGTAGATGAAGTCCAATAAATGCTAAACGTTGTTGGATA TCCTTATTTAATTCCATGTTGTTTTCTTCACCAATGGTTTTCATCATATATTGTTTAGAA AATCTTCGGGCTTCTGCAATTTTATTTTGCATCTCATTTTCATTTACAAACTCGTTTATT GCTTGCCTGCTAGCCTGCTCTTTTTCAAGTCTGATTTTTTCACGAGATACATTCTCTAAT TTCATAATCTGTTCTAATGCGTATTTTTTACCTCTTACATCCTCATTTCGCGTTCTTGAT GTTCAAGTATAGCATTTTGCTTTATTTGTAACAGACGTTTTCTATCCTCTGAAGGGTTGA TTAATCTGTAAATATTAAGCATCTTAATTCTTAATCCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_496#0      ATAAGTGTAAATAGTTATGCAATTTTATTAATTATTCCTGATTTACAAATTTCTCTAAAT 60
consensus_496#1      ----------------------------------------------------------NN 2
                                                                                 

consensus_496#0      TTTCAATGTCCGTTCTAATTGTATCATCATCTGGTTGAAGTTTTTGTGCAGCTC-TGTAT 119
consensus_496#1      NNNNNNNNNNNNCAGGCACCACACGGTCCAGTAATTTCCTTCTATATTCGGCTTGTTTAT 62
                                      *    *   **   *  **    * * * * * ***  * ***

consensus_496#0      TCGATAAGTCCTTCTTTGTATAATT-GTAGATTACAAAATGCTGCTCCACGCCTAATATG 178
consensus_496#1      TCAGCCACTCGTCCTCAGCTTGTTTTGTTGACT--------CTCGTTCAGGTGTAGGAAA 114
                     **    * ** * **  *  *  ** ** ** *        **  * ** *  **  *  

consensus_496#0      TGCACGCACACGTGATTTTAAATTTTGTGCTACAGGCGGTACA-CAAAGATCTAGTGCCA 237
consensus_496#1      TACTC-TAGGTGTAAATTTAACTTCGATTGTAGATGAAGTCCAATAAATGCTAAACGTTG 173
                     * * *  *   ** * ***** **   *  ** * *  ** **  ***     *  *   

consensus_496#0      TTGAACTATCTTCTAGAGCCTTAAAATAATTCCGCAATTG-TAAGTGACATGCAGCTCGA 296
consensus_496#1      TTGGATATCCTTATTTAATTCCATGTTGTTTTCTTCACCAATGGTTTTCATCATATATTG 233
                     *** *    *** *  *     *   *  ** *   *    *   *  ***         

consensus_496#0      TTCGAATAAGCCGAATGTAATTTAGGATTTTGTGTTATAGCTTCTGTATATGCAATGACA 356
consensus_496#1      TTTAGAAAATCTTCGGGCT-TCTGCAATTTTATTTTGCATCT----CATTTTCATTTACA 288
                     **   * ** *     *   * *   ***** * **  * **     ** * ** * ***

consensus_496#0      GCAGCTTCATAGTCTCCAGCTTGAAATAATGAGTCTCCTTTTTTGCGTAACCATATAGGA 416
consensus_496#1      --AACTCGTTTATTGCTTGCCTG------CTAGCCTGCTCTTTTTCA-----------AG 329
                       * **   *  *  *  ** **        ** ** ** **** *              

consensus_496#0      TCTAGTTCATTCATGGACAAGTCATCAGGCACCACACGGTCCAGTAATTTCCTTCTATAT 476
consensus_496#1      TCTGATTTTTTCACGAG---------ATACATTCTCTAATTTCATAATCTGTTCTAAT-- 378
                     ***  **  **** *           *  **        *    **** *  *   **  

consensus_496#0      TCGGCTTGTTTATTCAGCCACTCGTCCTCAGCTTGTTTTGTTGACTCTCGTTCAGGTGTA 536
consensus_496#1      ---GCGTATTTTTTACCTCTTACATCCTCATTTCGCGTTCTTGAT----GTTCAAGTATA 431
                        ** * *** **    *   * ******  * *  ** ****     ***** ** **

consensus_496#0      GGAAATACTCTAGGTGTAAATTTAACTTCGATTGTAGATGAAGTCCTC-ACCGGCAAATC 595
consensus_496#1      GCA-----------------TTTTGCTTTATTTGTAACAGACGTTTTCTATCCTCTGAAG 474
                     * *                 ***  ***   *****   ** **  ** * *  *  *  

consensus_496#0      TATTGGTTTCTC-ATAAATGCTAAACGTTGTTGGATATCCTTATTTAATTC 645
consensus_496#1      GGTTGATTAATCTGTAAATATTAAGCATC-TTAATTCTTAATCCT------ 518
                       *** **  **  *****  *** * *  **   * *   *  *      




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)