These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_496#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 645 fasta sequence [ATAAGTGTAAATAGTTATGCAATTTTATTAATTATTCCTGATTTACAAATTTCTCTAAATTTTCAATGTCCGTTCTAATTGTATCATCATCTGGTTGAAGTTTTTGTGCAGCTCTGTATTCGATAAGTCCTTCTTTGTATAATTGTAGATTACAAAATGCTGCTCCACGCCTAATATGTGCACGCACACGTGATTTTAAATTTTGTGCTACAGGCGGTACACAAAGATCTAGTGCCATTGAACTATCTTCTAGAGCCTTAAAATAATTCCGCAATTGTAAGTGACATGCAGCTCGATTCGAATAAGCCGAATGTAATTTAGGATTTTGTGTTATAGCTTCTGTATATGCAATGACAGCAGCTTCATAGTCTCCAGCTTGAAATAATGAGTCTCCTTTTTTGCGTAACCATATAGGATCTAGTTCATTCATGGACAAGTCATCAGGCACCACACGGTCCAGTAATTTCCTTCTATATTCGGCTTGTTTATTCAGCCACTCGTCCTCAGCTTGTTTTGTTGACTCTCGTTCAGGTGTAGGAAATACTCTAGGTGTAAATTTAACTTCGATTGTAGATGAAGTCCTCACCGGCAAATCTATTGGTTTCTCATAAATGCTAAACGTTGTTGGATATCCTTATTTAATTC] [+] EMBL CD074841 [ATAAGTGTAAATAGTTATGCAATTTTATTAATTATTCCTGATTTACAAATTTCTCTAAATTTTCAATGTCCGTTCTAATTGTATCATCATCTGGTTGAAGTTTTTGTGCAGCTCTGTATTCGATAAGTCCTTCTTTGTATAATTGTAGATTACAAAATGCTGCTCCACGCCTAATATGTGCACGCACACGTGATTTTAAATTTTGTGCTACAGGCGGTACACAAAGATCTAGTGCCATTGAACTATCTTCTAGAGCCTTAAAATAATTCCGCAATTGTAAGTGACATGCAGCTCGATTCGAATAAGCCGAATGTAATTTAGGATTTTGTGTTATAGCTTCTGTATATGCAATGACAGCAGCTTCATAGTCTCCAGCTTGAAATAATGAGTCTCCTTTTTTGCGTAACCATATAGGATCTAGTTCATTCATGGACAAGTCATCAGGCACCACACGGTCCAGTAATTTCCTTCTATATTCGGCTTGTTTATTCAGCCACTCGTCCTCAGCTTGTTTTGTTGACTCTCGTTCAGGTGTAGGAAATACTCTAGGTGTAAATTTAACTTCGATTGTAGATGAAGTCCTCACCGGCAAATCTATTGGTTTCTCATAAATGCTAAACGTTGTTGGATATCCTTATTTAATTC] consensusID : consensus_496#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 518 fasta sequence [NNNNNNNNNNNNNNCAGGCACCACACGGTCCAGTAATTTCCTTCTATATTCGGCTTGTTTATTCAGCCACTCGTCCTCAGCTTGTTTTGTTGACTCTCGTTCAGGTGTAGGAAATACTCTAGGTGTAAATTTAACTTCGATTGTAGATGAAGTCCAATAAATGCTAAACGTTGTTGGATATCCTTATTTAATTCCATGTTGTTTTCTTCACCAATGGTTTTCATCATATATTGTTTAGAAAATCTTCGGGCTTCTGCAATTTTATTTTGCATCTCATTTTCATTTACAAACTCGTTTATTGCTTGCCTGCTAGCCTGCTCTTTTTCAAGTCTGATTTTTTCACGAGATACATTCTCTAATTTCATAATCTGTTCTAATGCGTATTTTTTACCTCTTACATCCTCATTTCGCGTTCTTGATGTTCAAGTATAGCATTTTGCTTTATTTGTAACAGACGTTTTCTATCCTCTGAAGGGTTGATTAATCTGTAAATATTAAGCATCTTAATTCTTAATCCT] [-] EMBL CD081016 [NNNNNNNNNNNNNNCAGGCACCACACGGTCCAGTAATTTCCTTCTATATTCGGCTTGTTTATTCAGCCACTCGTCCTCAGCTTGTTTTGTTGACTCTCGTTCAGGTGTAGGAAATACTCTAGGTGTAAATTTAACTTCGATTGTAGATGAAGTCCAATAAATGCTAAACGTTGTTGGATATCCTTATTTAATTCCATGTTGTTTTCTTCACCAATGGTTTTCATCATATATTGTTTAGAAAATCTTCGGGCTTCTGCAATTTTATTTTGCATCTCATTTTCATTTACAAACTCGTTTATTGCTTGCCTGCTAGCCTGCTCTTTTTCAAGTCTGATTTTTTCACGAGATACATTCTCTAATTTCATAATCTGTTCTAATGCGTATTTTTTACCTCTTACATCCTCATTTCGCGTTCTTGATGTTCAAGTATAGCATTTTGCTTTATTTGTAACAGACGTTTTCTATCCTCTGAAGGGTTGATTAATCTGTAAATATTAAGCATCTTAATTCTTAATCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_496#0 ATAAGTGTAAATAGTTATGCAATTTTATTAATTATTCCTGATTTACAAATTTCTCTAAAT 60 consensus_496#1 ----------------------------------------------------------NN 2 consensus_496#0 TTTCAATGTCCGTTCTAATTGTATCATCATCTGGTTGAAGTTTTTGTGCAGCTC-TGTAT 119 consensus_496#1 NNNNNNNNNNNNCAGGCACCACACGGTCCAGTAATTTCCTTCTATATTCGGCTTGTTTAT 62 * * ** * ** * * * * * *** * *** consensus_496#0 TCGATAAGTCCTTCTTTGTATAATT-GTAGATTACAAAATGCTGCTCCACGCCTAATATG 178 consensus_496#1 TCAGCCACTCGTCCTCAGCTTGTTTTGTTGACT--------CTCGTTCAGGTGTAGGAAA 114 ** * ** * ** * * ** ** ** * ** * ** * ** * consensus_496#0 TGCACGCACACGTGATTTTAAATTTTGTGCTACAGGCGGTACA-CAAAGATCTAGTGCCA 237 consensus_496#1 TACTC-TAGGTGTAAATTTAACTTCGATTGTAGATGAAGTCCAATAAATGCTAAACGTTG 173 * * * * ** * ***** ** * ** * * ** ** *** * * consensus_496#0 TTGAACTATCTTCTAGAGCCTTAAAATAATTCCGCAATTG-TAAGTGACATGCAGCTCGA 296 consensus_496#1 TTGGATATCCTTATTTAATTCCATGTTGTTTTCTTCACCAATGGTTTTCATCATATATTG 233 *** * *** * * * * ** * * * * *** consensus_496#0 TTCGAATAAGCCGAATGTAATTTAGGATTTTGTGTTATAGCTTCTGTATATGCAATGACA 356 consensus_496#1 TTTAGAAAATCTTCGGGCT-TCTGCAATTTTATTTTGCATCT----CATTTTCATTTACA 288 ** * ** * * * * ***** * ** * ** ** * ** * *** consensus_496#0 GCAGCTTCATAGTCTCCAGCTTGAAATAATGAGTCTCCTTTTTTGCGTAACCATATAGGA 416 consensus_496#1 --AACTCGTTTATTGCTTGCCTG------CTAGCCTGCTCTTTTTCA-----------AG 329 * ** * * * ** ** ** ** ** **** * consensus_496#0 TCTAGTTCATTCATGGACAAGTCATCAGGCACCACACGGTCCAGTAATTTCCTTCTATAT 476 consensus_496#1 TCTGATTTTTTCACGAG---------ATACATTCTCTAATTTCATAATCTGTTCTAAT-- 378 *** ** **** * * ** * **** * * ** consensus_496#0 TCGGCTTGTTTATTCAGCCACTCGTCCTCAGCTTGTTTTGTTGACTCTCGTTCAGGTGTA 536 consensus_496#1 ---GCGTATTTTTTACCTCTTACATCCTCATTTCGCGTTCTTGAT----GTTCAAGTATA 431 ** * *** ** * * ****** * * ** **** ***** ** ** consensus_496#0 GGAAATACTCTAGGTGTAAATTTAACTTCGATTGTAGATGAAGTCCTC-ACCGGCAAATC 595 consensus_496#1 GCA-----------------TTTTGCTTTATTTGTAACAGACGTTTTCTATCCTCTGAAG 474 * * *** *** ***** ** ** ** * * * * consensus_496#0 TATTGGTTTCTC-ATAAATGCTAAACGTTGTTGGATATCCTTATTTAATTC 645 consensus_496#1 GGTTGATTAATCTGTAAATATTAAGCATC-TTAATTCTTAATCCT------ 518 *** ** ** ***** *** * * ** * * * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||