cluster # 5061

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Schistosoma mansoni
cluster # 5061 cluster # 5061 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5061#0 length = 740 sequences # 2

consensus_5061#1 length = 543 sequences # 1

consensusID : consensus_5061#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 740
fasta sequence

                              [GGGGGGATCTGTCACTTCGACAGGATCACGTCGGCGACTAGAATTCTCCGAACGACTTCCAGCGGAACGGGATTTCGAAGACCGAGATGTTGACGGTGCACAGCTCGTGGAGACGGGAACTCGTGATTTAGAAGTAGTAGTATTAGAGACAGCTCCAGTAACAGAGGTAGCAGTGGATGATGGTGTGGAGGAAATGGACTGCCAATTACTTAAAGCAGAAGCGATCAGATTCGCGTATGCTGGATGACGAGCATAAGCGCCAAATGTATTTAATAACTGTTGTTGTTGTAAATATTGTTGTGTATTGAAATTGTTAACCTGAGCGGCAACAACAGATGATGGAGAATTGGACGTCGTTACATTGTTATTGCCGACACCACTGCTGGTTGCTGCACTAGCCAGCAAACTGTTTANATAATGTTTATAAGCTAATGCTTCCATATTACTTGTATCTTGACCCCTAGCACTTGCAACACGATTATAGATTGCACGATCCTCCACTTCTACTGAATATGGCATATAATTTGGATTTGCATCCAACCAAGATTCCAGTGATCTTCGTTCAGGAGCTTTATCACCATAAATTAAAGAACCATCAACTAAACTAATTACTGGGACACGTACATCCCAAATGTCAGAATTAACATTCTGAGAAGCTTTCTGTACATTATTATTGTTCGACTCAATTTTAGATGAACTGAGACGTTCACGTTTAGAACTGTAAGGAGCTTTTGCAAATG]

[+] EMBL CD159425             [GGGGGGATCTGTCACTTCGACAGGATCACGTCGGCGACTAGAATTCTCCGAACGACTTCCAGCGGAACGGGATTTCGAAGACCGAGATGTTGACGGTGCACAGCTCGTGGAGACGGGAACTCGTGATTTAGAAGTAGTAGTATTAGAGACAGCTCCAGTAACAGAGGTAGCAGTGGATGATGGTGTGGAGGAAATGGACTGCCAATTACTTAAAGCAGAAGCGATCAGATTCGCGTATGCTGGATGACGAGCATAAGCGCCAAATGTATTTAATAACTGTTGTTGTTGTAAATATTGTTGTGTATTGAAATTGTTAACCTGAGCGGCAACAACAGATGATGGAGAATTGGACGTCGTTACATTGTTATTGCCGACACCACTGCTGGTTGCTGCACTAGCCAGCAAACTGTTTANATAATGTTTATAAGCTAATGCTTCCATATTACTTGT                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD160447             [                                                                                                                                                                                                                                                                                                                                                                                                         ACTAGCCAGCAAACTGTTTAGATAATGTTTATAAGCTAATGCTTCCATATTACTTGTATCTTGACCCCTAGCACTTGCAACACGATTATAGATTGCACGATCCTCCACTTCTACTGAATATGGCATATAATTTGGATTTGCATCCAACCAAGATTCCAGTGATCTTCGTTCAGGAGCTTTATCACCATAAATTAAAGAACCATCAACTAAACTAATTACTGGGACACGTACATCCCAAATGTCAGAATTAACATTCTGAGAAGCTTTCTGTACATTATTATTGTTCGACTCAATTTTAGATGAACTGAGACGTTCACGTTTAGAACTGTAAGGAGCTTTTGCAAATG]




>consensus_5061#0
GGGGGGATCTGTCACTTCGACAGGATCACGTCGGCGACTAGAATTCTCCGAACGACTTCC
AGCGGAACGGGATTTCGAAGACCGAGATGTTGACGGTGCACAGCTCGTGGAGACGGGAAC
TCGTGATTTAGAAGTAGTAGTATTAGAGACAGCTCCAGTAACAGAGGTAGCAGTGGATGA
TGGTGTGGAGGAAATGGACTGCCAATTACTTAAAGCAGAAGCGATCAGATTCGCGTATGC
TGGATGACGAGCATAAGCGCCAAATGTATTTAATAACTGTTGTTGTTGTAAATATTGTTG
TGTATTGAAATTGTTAACCTGAGCGGCAACAACAGATGATGGAGAATTGGACGTCGTTAC
ATTGTTATTGCCGACACCACTGCTGGTTGCTGCACTAGCCAGCAAACTGTTTANATAATG
TTTATAAGCTAATGCTTCCATATTACTTGTATCTTGACCCCTAGCACTTGCAACACGATT
ATAGATTGCACGATCCTCCACTTCTACTGAATATGGCATATAATTTGGATTTGCATCCAA
CCAAGATTCCAGTGATCTTCGTTCAGGAGCTTTATCACCATAAATTAAAGAACCATCAAC
TAAACTAATTACTGGGACACGTACATCCCAAATGTCAGAATTAACATTCTGAGAAGCTTT
CTGTACATTATTATTGTTCGACTCAATTTTAGATGAACTGAGACGTTCACGTTTAGAACT
GTAAGGAGCTTTTGCAAATG

consensusID : consensus_5061#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 543
fasta sequence

                              [AACCTATAAACTCTTGGTGAGTGATCAACCTAATTTAACCAGAATATTATGCTATTTTTGATTATTTGTTTATTTAAGAGTTTTTTATTCAATGTAATAAAGCCAGACCACTTAACAGGATACTTTACAAAATGAAAAGTAGCAGTAAAGGTTGACACGTTTAGGAATATAAAACAATTCAAAACTAATAACTAACTATACAATCGATTAAAACTCATCTAAATAGGTATCACCACTAAAAAAGACCGGAATACAGACGCAATAAATTGCCCTATTTGATAAAATATTTTTACCAGCGGAACGGGATTTCGAAGACCGAGATGTTGACGGTGCACAGCTCGTGGAGACGGGAACTCGTGATTTAGAAGTAGTAGTATTAGAGACAGCTACAGTAACAGAGGTAGCAGTGGATGATGGTGTGGAGGAAATGGACTGCCAATTACTTAAAGCAGAAGCGATCAGATTCGCGTATGCTGGATGACGAGCATAAGCGCCANATGTATNTAATAACTGTTGTTGTTGTAAATATTGTTGTGTATTGAA]

[+] EMBL CD194222             [AACCTATAAACTCTTGGTGAGTGATCAACCTAATTTAACCAGAATATTATGCTATTTTTGATTATTTGTTTATTTAAGAGTTTTTTATTCAATGTAATAAAGCCAGACCACTTAACAGGATACTTTACAAAATGAAAAGTAGCAGTAAAGGTTGACACGTTTAGGAATATAAAACAATTCAAAACTAATAACTAACTATACAATCGATTAAAACTCATCTAAATAGGTATCACCACTAAAAAAGACCGGAATACAGACGCAATAAATTGCCCTATTTGATAAAATATTTTTACCAGCGGAACGGGATTTCGAAGACCGAGATGTTGACGGTGCACAGCTCGTGGAGACGGGAACTCGTGATTTAGAAGTAGTAGTATTAGAGACAGCTACAGTAACAGAGGTAGCAGTGGATGATGGTGTGGAGGAAATGGACTGCCAATTACTTAAAGCAGAAGCGATCAGATTCGCGTATGCTGGATGACGAGCATAAGCGCCANATGTATNTAATAACTGTTGTTGTTGTAAATATTGTTGTGTATTGAA]




>consensus_5061#1
AACCTATAAACTCTTGGTGAGTGATCAACCTAATTTAACCAGAATATTATGCTATTTTTG
ATTATTTGTTTATTTAAGAGTTTTTTATTCAATGTAATAAAGCCAGACCACTTAACAGGA
TACTTTACAAAATGAAAAGTAGCAGTAAAGGTTGACACGTTTAGGAATATAAAACAATTC
AAAACTAATAACTAACTATACAATCGATTAAAACTCATCTAAATAGGTATCACCACTAAA
AAAGACCGGAATACAGACGCAATAAATTGCCCTATTTGATAAAATATTTTTACCAGCGGA
ACGGGATTTCGAAGACCGAGATGTTGACGGTGCACAGCTCGTGGAGACGGGAACTCGTGA
TTTAGAAGTAGTAGTATTAGAGACAGCTACAGTAACAGAGGTAGCAGTGGATGATGGTGT
GGAGGAAATGGACTGCCAATTACTTAAAGCAGAAGCGATCAGATTCGCGTATGCTGGATG
ACGAGCATAAGCGCCANATGTATNTAATAACTGTTGTTGTTGTAAATATTGTTGTGTATT
GAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5061#0      ------------------------------------------------------------
consensus_5061#1      AACCTATAAACTCTTGGTGAGTGATCAACCTAATTTAACCAGAATATTATGCTATTTTTG 60
                                                                                  

consensus_5061#0      ------------------------------------------------------------
consensus_5061#1      ATTATTTGTTTATTTAAGAGTTTTTTATTCAATGTAATAAAGCCAGACCACTTAACAGGA 120
                                                                                  

consensus_5061#0      ------------------------------------------------------------
consensus_5061#1      TACTTTACAAAATGAAAAGTAGCAGTAAAGGTTGACACGTTTAGGAATATAAAACAATTC 180
                                                                                  

consensus_5061#0      ---------------------------------------------GGGGGGATCTGTCAC 15
consensus_5061#1      AAAACTAATAACTAACTATACAATCGATTAAAACTCATCTAAATAGGTATCACCACTAAA 240
                                                                   **    * *  * * 

consensus_5061#0      TTCGACAGGATCACGTCGGCGACTAGA------ATTCTCCGAACGACTT---CCAGCGGA 66
consensus_5061#1      AAAGACCGGAATACAGACGCAATAAATTGCCCTATTTGATAAAATATTTTTACCAGCGGA 300
                         *** ***  **    ** *  *        ***     **  * **   ********

consensus_5061#0      ACGGGATTTCGAAGACCGAGATGTTGACGGTGCACAGCTCGTGGAGACGGGAACTCGTGA 126
consensus_5061#1      ACGGGATTTCGAAGACCGAGATGTTGACGGTGCACAGCTCGTGGAGACGGGAACTCGTGA 360
                      ************************************************************

consensus_5061#0      TTTAGAAGTAGTAGTATTAGAGACAGCTCCAGTAACAGAGGTAGCAGTGGATGATGGTGT 186
consensus_5061#1      TTTAGAAGTAGTAGTATTAGAGACAGCTACAGTAACAGAGGTAGCAGTGGATGATGGTGT 420
                      **************************** *******************************

consensus_5061#0      GGAGGAAATGGACTGCCAATTACTTAAAGCAGAAGCGATCAGATTCGCGTATGCTGGATG 246
consensus_5061#1      GGAGGAAATGGACTGCCAATTACTTAAAGCAGAAGCGATCAGATTCGCGTATGCTGGATG 480
                      ************************************************************

consensus_5061#0      ACGAGCATAAGCGCCAAATGTATTTAATAACTGTTGTTGTTGTAAATATTGTTGTGTATT 306
consensus_5061#1      ACGAGCATAAGCGCCANATGTATNTAATAACTGTTGTTGTTGTAAATATTGTTGTGTATT 540
                      **************** ****** ************************************

consensus_5061#0      GAAATTGTTAACCTGAGCGGCAACAACAGATGATGGAGAATTGGACGTCGTTACATTGTT 366
consensus_5061#1      GAA--------------------------------------------------------- 543
                      ***                                                         

consensus_5061#0      ATTGCCGACACCACTGCTGGTTGCTGCACTAGCCAGCAAACTGTTTANATAATGTTTATA 426
consensus_5061#1      ------------------------------------------------------------
                                                                                  

consensus_5061#0      AGCTAATGCTTCCATATTACTTGTATCTTGACCCCTAGCACTTGCAACACGATTATAGAT 486
consensus_5061#1      ------------------------------------------------------------
                                                                                  

consensus_5061#0      TGCACGATCCTCCACTTCTACTGAATATGGCATATAATTTGGATTTGCATCCAACCAAGA 546
consensus_5061#1      ------------------------------------------------------------
                                                                                  

consensus_5061#0      TTCCAGTGATCTTCGTTCAGGAGCTTTATCACCATAAATTAAAGAACCATCAACTAAACT 606
consensus_5061#1      ------------------------------------------------------------
                                                                                  

consensus_5061#0      AATTACTGGGACACGTACATCCCAAATGTCAGAATTAACATTCTGAGAAGCTTTCTGTAC 666
consensus_5061#1      ------------------------------------------------------------
                                                                                  

consensus_5061#0      ATTATTATTGTTCGACTCAATTTTAGATGAACTGAGACGTTCACGTTTAGAACTGTAAGG 726
consensus_5061#1      ------------------------------------------------------------
                                                                                  

consensus_5061#0      AGCTTTTGCAAATG 740
consensus_5061#1      --------------